Publications
Notter MP, Herholz P, Da Costa S, Gulban OF, Isik AI, Gaglianese A, Murray MM. fMRIflows: A Consortium of Fully Automatic Univariate and Multivariate fMRI Processing Pipelines - Brain Topography, : , December 2022
del Aguila Pla P, Boquet-Pujadas A, Jalden J. Convex Quantization Preserves Logconcavity - IEEE Signal Processing Letters, 29: 2697–2701, December 2022
Mosso J, Simicic D, Şimşek K, Kreis R, Cudalbu C, Jelescu IO. MP-PCA denoising for diffusion MRS data: promises and pitfalls - NeuroImage, 263(2022): 119634, November 2022
Layer N, Weglage A, Müller V, Meister H, Lang-Roth R, Walger M, Murray MM, Sandmann P. Electrophysiological differences and similarities in audiovisual speech processing in CI users with unilateral and bilateral hearing loss - Current Research in Neurobiology, 3(2022): 100059, November 2022
Zalachoras I, Ramos-Fernández E, Hollis F, Trovo L, Rodrigues J, Strasser A, Zanoletti O, Steiner P, Preitner N, Xin L, Astori S, Sandi C. Glutathione in the nucleus accumbens regulates motivation to exert reward-incentivized effort - eLife, 11: e77791, November 2022
Bulcke CV, Wynen M, Detobel J, La Rosa F, Absinta M, Dricot L, Macq B, Bach Cuadra M, Maggi P. BMAT: An open-source BIDS managing and analysis tool - Neuroimage: Clinical, 36: 2213-1582, October 2022
Bagdasarova A, Bréchet L, Brunet D, Michel CM, Gaffreya MS. Spatiotemporal dynamics of EEG microstates in four- to eight-year-old children: Age- and sex-related effects - Developmental Cognitive Neuroscience, 57(2022): 101134, October 2022
Dechantsreiter E, Padberg F, Morash A, Kumpf U, Nguyen A, Menestrina Z, Windel F, Burkhardt G, Goerigk S, Morishita T, Soldini A, Ahissar S, Cohen T, Pasqualotto A, Rubene L, Konosonoka L, Keeser D, Zill P, Assi R, Gardier R, Viñals R, Thiran JP, Segman R, Benjamini Y, Bonne O, Hummel FC, Bavelier D, Rancans E, Nahum M. Examining the synergistic effects of a cognitive control video game and a home-based, self-administered non-invasive brain stimulation on alleviating depression: the DiSCoVeR trial protocol - European Archives of Psychiatry and Clinical Neuroscience, : , October 2022
Cherix A, Poitry-Yamate C, Lanz B, Zanoletti O, Grosse J, Sandi C, Gruetter R, Cardinaux JR. Deletion of Crtc1 leads to hippocampal neuroenergetic impairments associated with depressive-like behavior - Molecular Psychiatry, : , October 2022
Kvamme TL, Ros T, Overgaard M. Can neurofeedback provide evidence of direct brain-behavior causality? - NeuroImage, 258(2022): 119400, September 2022
Dabrowski O, Courvoisier S, Falcone JL, Klauser A, Songeon J, Kocher M, Chopard B, Lazeyras F. Choreography Controlled (ChoCo) brain MRI artifact generation for labeled motion-corrupted datasets - Physica Medica, 102(2022): 79-87, September 2022
Fleury L, Koch PJ, Wessel MJ, Bonvin C, San Millan D, Constantin C, Vuadens P, Adolphsen J, Cadic Melchior A, Brügger J, Beanato E, Ceroni M, Menoud P, De Leon Rodriguez D, Zufferey V, Meyer NH, Egge P, Harquel S, Popa T, Estelle Raffin E, Girard G, Thiran JP, Vaney C, Alvarez V, Turlan JL, Mühl A, Léger B, Morishita T, Micera S, Blanke O, Van De Ville D, Hummel FC. Toward individualized medicine in stroke—The TiMeS project: Protocol of longitudinal, multi-modal, multi-domain study in stroke - Frontiers in Neurology, 13: 939640, September 2022
Songeon J, Courvoisier S, Xin L, Agius T, Dabrowski O, Longchamp A, Lazeyras F, Antoine Klauser A. In vivo magnetic resonance 31P-Spectral Analysis With Neural Networks: 31P-SPAWNN - Magnetic Resonance in Medicine, (2022): 1-14, September 2022
La Rosa F, Wynen M, Al-Louzi O, Beck ES, Huelnhagen T, Maggi P, Thiran JP, Kober T, Shinohara RT, Sati P, Reich DS, Granziera C, Absinta M, Bach Cuadra M. Cortical lesions, central vein sign, and paramagnetic rim lesions in multiple sclerosis: Emerging machine learning techniques and future avenues - NeuroImage: Clinical, 36: 103205, September 2022
Taymourtash A, Kebiri H, Schwartz E, Nenning KH, Tourbier S, Kasprian G, Prayer D, Bach Cuadra M, Langs G. Spatio-temporal motion correction and iterative reconstruction of in-utero fetal fMRI - Medical Image Computing and Computer Assisted Intervention – MICCAI 2022, 13436: 603-612, September 2022
Rahmanzadeh R, Galbusera R, Lu PJ, Bahn E, Weigel M, Barakovic M, Franz J, Nguyen TD, Spincemaille P, Schiavi S, Daducci A, La Rosa F, Absinta M, Sati P, Bach Cuadra M, Radue EW, Leppert D, Kuhle J, Kappos L, Brück W, Reich DS, Stadelmann C, Wang Y, Granziera C. A new advanced MRI biomarker for remyelinated lesions in multiple sclerosis - Annals of Neurology, 92: 486-502, September 2022
D. Tomar, B. Bozorgtabar, M. Lortkipanidze, G. Vray, M.S. Rad, J.-Ph. Thiran. Self-Supervised Generative Style Transfer for One-Shot Medical Image Segmentation - Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, : 1998-2008, July 2022
Müller J, La Rosa F, Beaumont J, Tsagkas C, Rahmanzadeh R, Weigel M, Bach Cuadra M, Gambarota G, Granziera C. Fluid and White Matter Suppression: New Sensitive 3 T Magnetic Resonance Imaging Contrasts for Cortical Lesion Detection in Multiple Sclerosis - Investigative Radiology, : , May 2022
Alemán-Gómez Y, Baumgartner T, Klauser P, Cleusix M, Jenni R, Hagmann P, Conus P, Do KQ, Bach Cuadra M, Baumann PS, Steullet P. Multimodal magnetic resonance imaging depicts widespread and subregion specific anomalies in the thalamus of early-psychosis and chronic schizophrenia patients - Schizophrenia Bulletin, : , September 2022
Mancini V, Rochas V, Seeber M, Grent-‘t-Jong T, Rihs TA, Latrèche C, Uhlhaas PJ, Michel CM, Eliez S. Oscillatory neural signatures of visual perception across developmental stages in individuals - Biological Psychiatry, 92(5): 407-418, September2022
Yu T, Hilbert T, Piredda GF, Joseph A, Bonanno G, Zenkhri S, Omoumi P, Bach Cuadra M, Canales-Rodriguez EJ, Kober T, Thiran JP. Validation and generalizability of self-supervised image reconstruction methods for undersampled MRI - Journal of Machine Learning for Biomedical Imaging, 022: 1-31, August 2022
Rahmanzadeh R, Weigel M, Lu PJ, Melie-Garcia L, Nguyen TD, Cagol A, La Rosa F, Barakovic M, Lutti A, Wang Y, Bach Cuadra M, Radue EW, Gaetano L, Kappos L, Kuhle J, Magon S, Granziera C. A comparative assessment of myelin-sensitive measures in multiple sclerosis patients and healthy subjects - NeuroImage: Clinical, 36(2022): 103177, August 2022
Jelescu I, de Skowronski A, Geffroy F, Palombo M, Novikov DS. Neurite Exchange Imaging (NEXI): A minimal model of diffusion in gray matter with inter-compartment water exchange - NeuroImage, 256(2022): 119277, August 2022
Griffa A, Preti M G. Brain structure-function coupling is unique to individuals across multiple frequency bands: a graph signal processing study - 30th European Signal Processing Conference (EUSIPCO), : , Belgrade, Serbia, August 2022
Aleman-Gómez Y, Griffa A, Houde JC, Najdenovska E, Magon S, Bach Cuadra M, Descoteaux M, Hagmann P. A multi-scale probabilistic atlas of the human connectome - Scientific Data, 516: , August 2022
Omidvarnia A, Liégeois R, Amico E, Preti MG, Zalesky A, Van De Ville D. On the Spatial Distribution of Temporal Complexity in Resting State and Task Functional MRI - Entropy, 24(2022): 1148, August 2022
Di Noto T, Marie G, Tourbier S, Alemán-Gómez Y, Esteban O, Saliou G, Bach Cuadra M, Hagmann P, Richiardi J. Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and anatomical knowledge - Neuroinformatics, : , August 2022
Maffei C, Girard G, Schilling KG, Baran Aydogan D, Adluru N, Zhylka A, Wu Y, Mancini M, Hamamci A, Sarica A, Teillac A, Baete SH, Karimi D, Yeh FC, Yildiz ME, Gholipour A, Bihan-Poudec Y, Hiba B, Quattrone A, Quattrone A, Boshkovski T, Stikov N, Yap PT, de Luca A, Pluim J, Leemans A, Prabhakaran V, Bendlin BB, Alexander AL, Landman BA, Canales-Rodríguez EJ, Barakovic M, Rafael-Patino J, Yu T, Rensonnet G, Schiavi S, Daducci A, Pizzolato M, Fischi-Gomez E, Thiran JP, Dai G, Grisot G, Lazovski N, Puch S, Ramos M, Rodrigues P, Prčkovska V, Jones R, Lehman J, Haber SN, Yendiki A. Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI - NeuroImage, 257(2022): 119327, August 2022
Festari C, Massa F, Cotta Ramusino M, Gandolfo F, Nicolosi V, Orini S, Aarsland D, Agosta F, Babiloni C, Boada M, Borroni B. Cappa S, Dubois B, Frederiksen KS, Froelich L, Garibotto V, Georges J, Haliassos A, Hansson O, Jessen F, Kamondi A, Kessels RPC, Morbelli S, O’Brien JT, Otto M, Perret-Liaudet A, Pizzini FB, Ritchie CW, Scheltens P, Vandenbulcke M, Vanninen R, Verhey F, Vernooij MW, Yousry T, Van Der Flier WM, Nobili F, Frisoni GB. European consensus for the diagnosis of MCI and mild dementia: Preparatory phase - Alzheimer's & Dementia, 2022: 1-13, August 2022
Hadjihambi A, Cudalbu C, Pierzchala K, Simicic S, Donnelly C, Konstantinou C, Davies N, Habtesion A, Gourine AV, Jalan R, Hosford PS. Abnormal brain oxygen homeostasis in an animal model of liver disease - JHEP Reports, 4(8): 100509, August 2022
Férat V, Arns M, Deiber MP, Hasler R, Perroud N, Michel CM, Ros T. Electroencephalographic Microstates as Novel Functional Biomarkers for Adult Attention-Deficit/Hyperactivity Disorder - Biological Psychiatry, 7(8): 814–823, August 2022
Terpou BA, Shaw SB, Theberge J, Ferat V, Michel CM, McKinnon MC, Lanius RA, Ros T. Spectral decomposition of EEG microstates in post-traumatic stress disorder - NeuroImage: Clinical, 35(2022): 10315, August 2022
Koch PJ, Girard G, Brügger J, Cadic-Melchior AG, Beanato E, Park CH, Morishita T, Wessel MJ, Pizzolato M, Canales-Rodríguez EJ, Fischi-Gomez E, Schiavi S, Daducci A, Piredda GF, Hilbert T, Kober T, Thiran JP, Hummel FC. Evaluating reproducibility and subject-specificity of microstructure-informed connectivity - NeuroImage, 258(2022): 119356, July 2022
Fischi-Gomez E, Girard G, Koch PJ, Yu T, Pizzolato M, Brügger J, Piredda GF, Hilbert T, Cadic-Melchior AG, Beanato E, Park C-H, Morishita T, Wessel MJ, Schiavi S, Daducci A, Kober T, Canales-Rodríguez EJ, Hummel FC, Thiran JP. Variability and reproducibility of multi-echo T2 relaxometry: Insights from multi-site, multi-session and multi-subject MRI acquisitions - Frontiers in Radiology, 2: 930666, July 2022
Abbet Ch, Studer L, Fischer A, Dawson H, Zlobec I, Bozorgtabar B, Thiran JP. Self-rule to multi-adapt: Generalized multi-source feature learning using unsupervised domain adaptation for colorectal cancer tissue detection - Medical Image Analysis, 79(2022): 102473, July 2022
Notter MP*, Herholz P*, Da Costa S, Gulban OF, Isik AI, Gaglianese A, Murray MM. fMRIflows: A consortium of fully automatic Univariate and Multivariate fMRI processing pipelines - , : , 2022 (Under revision)
Tourbier S, Rue-Queralt J, Glomb K, Aleman-Gomez Y, Mullier E, Griffa A, Schöttner M, Wirsich J, Tuncel MA, Jancovic J, Bach Cuadra M, Hagmann P. Connectome mapper 3: A flexible and open-source pipeline software for multiscale multimodal human connectome mapping - Journal of Open Source Software, 7(74): 4248, June 2022
Simicic D, Cudalbu C, Pierzchala K. Overview of oxidative stress findings in hepatic encephalopathy: From cellular and ammonium-based animal models to human data - Analytical Biochemistry, 654(2022): 114795, June 2022
Tivadar RI, Arnold RC, Turoman N, Knebel JF, Murray MM. Digital haptics improve speed of visual search performance in a dual-task setting - Scientific Reports, 12(2022): 9728, June 2022
Mosso J, Yin T, Poitry-Yamate C, Simicic D, Lepore M, McLin VA, Braissant O, Cudalbu C, Lanz B. PET CMRglc mapping and 1H-MRS show altered glucose uptake and neurometabolic profiles in BDL rats - Analytical Biochemistry, 647(2022): 114606, June 2022
Andriot T, Ohnmacht P, Vuilleumier P, Thorens G, Khazaal Y, Ginovart N, Ros T. Electrophysiological and behavioral correlates of cannabis use disorder - Cognitive, Affective, & Behavioral Neuroscience, : , June 2022
Bortolin K, Delavari F, Preti MG, Sandini C, Mancini V, Mullier E, Van De Ville D, Eliez S. Neural substrates of psychosis revealed by altered dependencies between brain activity and white-matter architecture in individuals with 22q11 deletion syndrome - NeuroImage: Clinical, 35(2022): 103075, June 2022
Franceschiello B, Di Noto T, Bourgeois A, Murray MM, Minier A, Pouget P, Richiardi J, Bartolomeo P, Anselmi F. Machine learning algorithms on eye tracking trajectories to classify patients with spatial neglect - Computer Methods and Programs in Biomedicine, 221(2022): 106929, June 2022
Lajous H, Roy CW, Hilbert T, de Dumast P, Tourbier S, Alemán-Gómez Y, Yerly J, Yu T, Kebiri H, Payette K, Ledoux JB, Meuli R, Hagmann P, Jakab A, Dunet V, Koob M, Kober T, Stuber M, Bach Cuadra M. A fetal brain Magnetic Resonance acquisition numerical phantom (FaBiAN) - Scientific Reports, 12: 8682, May 2022
del Aguila Pla P, Unser M. Bona fide Riesz projections for density estimation - 2022 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2022: 5613-5616, Singapore, May 22
del Aguila Pla P, Unser M. Bona Fide Riesz Projections for Density Estimation - Forty-Seventh IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP'22), : 5613-5616, Singapore, Republic of Singapore, May 2022
Griffa A, Bommarito G, Assal F, Preti MG, Goldstein R, Armand S, Herrmann FR, Van De Ville D, Allali G. CSF tap test in idiopathic normal pressure hydrocephalus: still a necessary prognostic test? - Journal of Neurology, (2022): , May 2022
Maffei C, Girard G, Schilling KG, Baran Aydogan D, Adluru N, Zhylka A, Wu Y, Mancini M, Hamamci A, Sarica A,Teillac A, Baete SH, Karimi D, Yeh F-C, Yildiz ME, Gholipour A, Bihan-Poudec Y, Hiba B, Quattrone A, Quattrone A, Boshkovski T, Stikov N, Yap P-T, de Luca A, Pluim J, Leemans A, Prabhakaran V, Bendlin BB, Alexander AL, Landman BA, Canales-Rodríguez EJ, Barakovic M, Rafael-Patino J, Yu T, Rensonnet G, Schiavi S, Daducci A, Pizzolato M, Fischi-Gomez E, Thiran JP, Dai G, Grisot G, Lazovski N, Puch S, Ramos M, Rodrigues P, Prčkovska V, Jones R, Lehman J, Haber SN, Yendik A. Insights from the IronTract challenge: optimal methods for mapping brain pathways from multi-shell diffusion MRI - NeuroImage, 257(2022): 119327, May 2022
Pur DR, Preti, MG, De Ribaupierre A, Van De Ville D, Eagleson R, Mella N, de Ribaupierre S. Mapping of Structure-Function Age-Related Connectivity Changes on Cognition Using Multimodal MRI: A longitudinal study - Frontiers In Aging Neuroscience, 14: 757861, May 2022
Kebiri H, Canales-Rodríguez EJ, Lajous H, de Dumast P, Girard G, Alemán-Gómez Y, Koob M, Jakab A, Bach Cuadra M. Through-plane super-resolution with autoencoders in Diffusion Magnetic Resonance Imaging of the developing human brain - Frontiers in Neurology, 13: 827816, May 2022
Debarre T, Denoyelle Q, Unser M, Fageot J. Sparsest piecewise-linear regression of one-dimensional data - Journal of Computational and Applied Mathematics, 406(2022): 114044, May 2022
Bréchet L, Michel CM. EEG microstates in altered states of consciousness - Frontiers in Psychology, 13: 856697, April 2022
Griffa A, Amico E, Liégeois R, Van De Ville D, Preti MG. Brain structure-function coupling provides signatures for task decoding and individual fingerprinting - NeuroImage, 250(2022): 118970, April 2022
Griffa A, Amico E, Liégeois R, Van De Ville D, Preti MG. Brain structure-function coupling provides signatures for task decoding and individual fingerprinting - NeuroImage, 250: 118970, April 2022
Artoni F, Maillard J, Britz J, Seeber M, Lysakowski C, Bréchet L, Tramèr MR, Michel CM. EEG microstate dynamics indicate a U-shaped path to propofol-induced loss of consciousness - Neuroimage, 256(2022): 119156, March 2022