Publications
Adam-Darque A, Freitas L, Grouiller F, Sauser J, Lazeyras F, Van De Ville D, Pollien P, Garcia-Rodenas CL, Bergonzelli G, Hüppi PS, Ha-Vinh Leuchter R. Shedding light on excessive crying in babies - Pediatric Research, : , July 2020
Retsa C, Matusz PJ, Schnupp JW, Murray MM. Selective attention to sound features mediates cross-modal activation of visual cortices - Neuropsychologia, 144(107498): , July 2020
Franceschiello B, Di Sopra L, Minier A, Ionta S, Zeugin D, Notter MP, Bastiaansen JAM, Jorge J, Yerly J, Stuber M, Murray MM. 3-Dimensional Magnetic Resonance Imaging of the Freely Moving Human Eye - Progress in Neurobiology, 194(101885): , July 2020
Hayoz R, Vietti-Violi N, Duran R, Knebel JF, Ledoux JB, Dromain C. The combination of hepatobiliary phase with Gd-EOB-DTPA and DWI is highly accurate for the detection and characterization of liver metastases from neuroendocrine tumor - European Radiology, 30(12): 6593-6602, June 2020
Juchem C, Cudalbu C, de Graaf RA, Gruetter R, Henning A, Hetherington HP, Boer VO. B0 shimming for in vivo magnetic resonance spectroscopy: Experts’ consensus recommendations - NMR in Biomedicine, (e4350): , June 2020
Gudmundsson L, Vohryzek J, Fornari E, Clarke S, Hagmann P, Crottaz-Herbette S. A brief exposure to rightward prismatic adaptation changes resting-state network characteristics of the ventral attentional system - PLOS One, 15: e0234382, June 2020
Bozorgtabar B, Mahapatra D, Zlobec I, Rau T, Thiran JP. Computational pathology - Frontiers in Medicine, : , June 2020
Ros T, Enriquez-Geppert S, Zotev V, Scharnowski F, Nicholson A, Drechsler R. Consensus on the reporting and experimental design of clinical and cognitive-behavioural neurofeedback studies (CRED-nf checklist) - Brain, 143(6): 1674–1685, June 2020
Adam-Darque A, Pittet MP, Grouiller F, Rihs TA, Leuchter RH, Lazeyras F, Michel CM, Hüppi PS. Neural Correlates of Voice Perception in Newborns and the Influence of Preterm Birth - Cerebral Cortex, 9(144): , June 2020
Tivadar RI, Gaglianese A, Murray MM. Auditory Enhancement of Illusory Contour Perception - Multisensory Research, 34(1): 1-15, June 2020
Marcadent S, Hofmeister J, Preti MG, Martin S, Van De Ville D, Montet X. Generative adversarial networks improve the reproducibility and discriminative power of radiomics features - Radiology: Artificial Intelligence, 2(3): , May 2020
Piccini D, Demesmaeker R, Heerfordt J, Yerly J, Di Sopra L, Masci PG, Schwitter J, Van De Ville D, Richiardi J, Kober T, Stuber M. Deep Learning to Automate Reference-Free Image Quality Assessment of Whole-Heart MR Images - Radiology: Artificial Intelligence, 2(3): e190123, May 2020
Bach Cuadra M, Favre J, Omoumi P. Quantification in Musculoskeletal Imaging Using Computational Analysis and Machine Learning: Segmentation and Radiomics - Seminars in Musculoskeletal Radiology, 24(1): 50-64, February 2020
Siffredi V, Preti MG, Kebets V, Obertino S, Leventer RJ, McIlroy A, Wood A, Anderson V, Spencer-Smith M, Van De Ville D. Structural neuroplastic responses preserve functional connectivity and neurobehavioural outcomes in children born without corpus callosum - Cerebral Cortex, 31: 1227-1239, May 2020
Pugin D, Hofmeister J, Gasche Y, Vulliemoz S, Lovblad KO, Van De Ville D, Haller S. Resting-state brain activity for early prediction outcome in post-anoxic comatose patients with indeterminate clinical prognosis - American Journal of Neuroradiology, 41: 1022-1030, May 2020
Maggi P, Fartaria M, Jorge J, La Rosa F, Absinta M, Sati P, Meuli R, Du Pasquier R, Reich D, Bach Cuadra M, Granziera C, Richiardi J, Kober T. CVSnet: A machine learning approach for automated central vein sign assessment in multiple sclerosis - NMR in Biomedicine, : , March 2020
Dong J, Jelescu I, Ades-Aron B , Novikov D, Friedman K, Babb J, Osorio R, Galvin J, Shepherd T , Fieremans E. Diffusion MRI biomarkers of white matter microstructure vary nonmonotonically with increasing cerebral amyloid deposition - Neurobiology of Aging, 89: 118-128, May 2020
Rackayova V, Braissant O, Rougemont AL, Cudalbu C, McLin VA. Longitudinal osmotic and neurometabolic changes in young rats with chronic cholestatic liver disease - Scientific Reports, 10(7536): , May 2020
ZanchiF, Richard R, Hussami M, Monier A, Knebel JF, Omoumi P. MRI of non-specific low back pain and/or lumbar radiculopathy: do we need T1 when using a sagittal T2-weighted Dixon sequence? - European Radiology, 30: 2583-2593, February 2020
Anselmi F, Murray MM, Franceschiello B. A computational model for grid maps in neural populations - Journal of Computational Neuroscience, 48: 149–159, March 2020
Denervaud S, Gentaz E, Matusz PJ, Murray MM. Multisensory gains in simple detection predict global cognition in schoolchildren - Scientific Reports, 10(1394): , February 2020
De Zanet SI, Ciller C, Rudolph T, Maeder P, Munier F, Balmer A, Bach Cuadra M, Kowal JH. Landmark Detection for Fusion of Fundus and MRI Towards a Patient-Specific Multi-Modal Eye Model - IEEE Transactions on Biomedical Engineering, 62(2): 532-40, February 2015
Daducci A, Dal Palu A, Lemkaddem A, Thiran JP. COMMIT: Convex Optimization Modeling for Microstructure Informed Tractography - IEEE Transactions on Medical Imaging, 34(1): 246-57, January 2015
Daducci A, Canales-Rodríguez EJ, Zhang H, Dyrby TB, Alexander DC, Thiran J. Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data - NeuroImage, 105: 32-44, January 2015
Ciller C, De Zanet S, Rüegsegger MB, Pica A, Sznitman R, Thiran JP, Maeder P, Munier FL, Kowal JH, Bach Cuadra M. Automatic Segmentation of the Eye in 3D Magnetic Resonance Imaging: A Novel Statistical Shape Model for Treatment Planning of Retinoblastoma - International Journal of Radiation Oncology, Biology, Physics, 92(4): 794-802, July 2015
Bonnier G, Roche A, Romascano D, Simioni S, Meskaldji DE, Rotzinger D, Lin YC, Menegaz G, Schluep M, Du Pasquier R, Sumpf TJ, Frahm J, Thiran JP, Krueger G, Granziera C. Multicontrast MRI Quantification of Focal Inflammation and Degeneration in Multiple Sclerosis - BioMed Research International, : 569123, July 2015
Auría A, Daducci A, Thiran JP, Wiaux Y. Structured sparsity for spatially coherent fibre orientation estimation in diffusion MRI - NeuroImage, 115: 245-55, July 2015
Behjat H, Leonardi N, Sornmo L, Van De Ville D. Anatomically-adapted graph wavelets for improved group-level fMRI activation mapping - NeuroImage, 123: 185-99, December 2015
Tourbier S, Bresson X, Hagmann P, Thiran J-P, Meuli R, Bach Cuadra M. Efficient Total Variation Algorithm for Fetal Brain MRI Reconstruction - NeuroImage, 118: 584-97, September 2015
Rueda S, Fathima S, Knight CL, Yaqub M, Papageorghiou AT, Rahmatullah B, Foi A, Maggioni M, Pepe A, Tohka J, Stebbing R, Mcmanigle J, Ciurte A, Bresson, X, Bach Cuadra M, Sun C, Ponomarev G, Gelfand M, Kazanov M, Wang C, Chen H, Peng C, Hung C, Noble A. Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge - IEEE Transactions on Medical Imaging, 33(4): 797 - 813, August 2013
Leonardi N, Shirer WR, Greicius MD, Van De Ville D. Disentangling dynamic networks: Separated and joint expressions of functional connectivity patterns in time - Human Brain Mapping, 35(12): 5984-95, December 2014
Lemkaddem A, Skiöldebrand D, Dal Palú A, Thiran J-P, Daducci A. Global tractography with embedded anatomical priors for quantitative connectivity analysis - Frontiers in Neuroscience, 5: 232, November 2014
Lemkaddem A, Daducci A, Kunz N, Lazeyras F, Seeck M, Thiran J-P, Vulliemoz S. Connectivity and tissue microstructural alterations in right and left temporal lobe epilepsy revealed by diffusion spectrum imaging - NeuroImage: Clinical, 5: 349-358, December 2014
Foncubierta-Rodríguez A, Müller H, Depeursinge A. Retrieval of high-dimensional visual data: current state, trends and challenges ahead - Multimedia Tools and Applications, 69: 539–567, January 2013
Esteban O, Wollny G, Gorthi S, Ledesma-Carbayo MJ, Thiran JP, Santos A, Bach Cuadra M. MBIS: Multivariate Bayesian Image Segmentation tool - Computer Methods and Programs in Biomedicine, 115(2): 76-94, 2014
Emmert K, Breimhorst M, Bauermann T, Birklein F, Van De Ville D, Haller S. Comparison of anterior cingulate versus insular cortex as targets for real-time fMRI regulation during pain stimulation - Frontiers in Behavioral Neuroscience, 8: 350, October 2014
Depeursinge A, Foncubierta-Rodriguez A, Van De Ville D, Muller H. Three-dimensional solid texture analysis in biomedical imaging: review and opportunities - Medical Image Analysis, 18(1): 176-96, January 2014
Depeursinge A, Foncubierta-Rodriguez A, Van de Ville D, Muller H. Rotation-Covariant Texture Learning Using Steerable Riesz Wavelets - IEEE Transactions on Image Processing, 23(2): 898 - 908, December 2013
Daducci A, Van De Ville D, Thiran JP, Wiaux Y. Sparse regularization for fiber ODF reconstruction: From the suboptimality of l and l priors to l - Medical Image Analysis, 18(6): 820-33, August 2014
Ciurte A, Bresson X, Cuisenaire O, Houhou N, Nedevschi S, Thiran JP, Bach Cuadra M. Semi-supervised segmentation of ultrasound images based on patch representation and continuous min cut - PLOS One, 9(7): e100972, July 2014
Carrillo RE, McEwen JD, Wiaux Y. PURIFY: a new approach to radio-interferometric imaging - Monthly Notices of the Royal Astronomical Society, 439(4): 3591-604, February 2014
Bonanno G, Puy G, Wiaux Y, van Heeswijk RB, Piccini D, Stuber M. Self-Navigation with Compressed Sensing for 2D Translational Motion Correction in Free-Breathing Coronary MRI: A Feasibility Study - PLOS One, 9(8): e105523, August 2014
Auria A, Carrillo R, Thiran JP, Wiaux Y. Tensor optimization for optical-interferometric imaging - Monthly Notices of the Royal Astronomical Society, 437(3): 2083–2091, January 2014
Wolz L, McEwen JD, Abdalla FB, Carrillo RE, Wiaux Y. Revisiting the spread spectrum effect in radio interferometric imaging: a sparse variant of the w-projection algorithm - Monthly Notices of the Royal Astronomical Society, 436(3): 1993-2003, December 2013
Unser M, Chenouard N. A Unifying Parametric Framework for 2D Steerable Wavelet Transforms - SIAM Journal on Imaging Sciences, 6(1): 102-35, January 2013
Sulzer J, Haller S, Scharnowski F, Weiskopf N, Birbaumer N, Blefari ML, Bruehl AB, Cohen LG, DeCharms RC, Gassert R, Goebel R, Herwig U, LaConte S, Linden D, Luft A, Seifritz E, Sitaram R. Real-time fMRI neurofeedback: Progress and challenges - NeuroImage, 76: 386-99, August 2013
Schrouff J1, Rosa MJ, Rondina JM, Marquand AF, Chu C, Ashburner J, Phillips C, Richiardi J, Mourão-Miranda J. PRoNTo: Pattern Recognition for Neuroimaging Toolbox - Neuroinformatics, 11(3): 319-37, July 2013
Scharnowski F, Rees G, Walsh V.. Time and the brain: neurorelativity: The chronoarchitecture of the brain from the neuronal rather than the observer’s perspective - Trends in Cognitive Sciences, 17(2): 51-2, February 2013
Santarnecchi E1, Sicilia I, Richiardi J, Vatti G, Polizzotto NR, Marino D, Rocchi R, Van De Ville D, Rossi A.. Altered cortical and subcortical local coherence in obstructive sleep apnoea: a functional magnetic resonance imaging study - Journal of Sleep Research, 22(3): 337-47, June 2013
Richiardi J, Achard S, Bunke H, Van De Ville D. Machine Learning with Brain Graphs: Predictive Modeling Approaches for Functional Imaging in Systems Neuroscience - IEEE Signal Processing Magazine, 30(3): 58 - 70, April 2013
Pignat JM, Koval O, Van De Ville D, Voloshynovskiy S, Michel C, Pun T. The impact of denoising on independent component analysis of functional magnetic resonance imaging data - Journal of Neuroscience Methods, 213(1): 105-22, February 2013
Ottet MC, Schaer M, Cammoun L, Schneider M, Debbané M, Thiran JP, Eliez S. Reduced Fronto-Temporal and Limbic Connectivity in the 22q11.2 Deletion Syndrome: Vulnerability Markers for Developing Schizophrenia? - PLOS One, 8(3): e58429, March 2013
Ottet MC, Schaer M, Debbane M, Cammoun L, Thiran JP, Eliez S. Graph theory reveals dysconnected hubs in 22q11DS and altered nodal efficiency in patients with hallucinations - Frontiers in Human Neuroscience, 7: 402, September 2013
Nilchian M, Vonesch C, Modregger P, Stampanoni M, Unser M. Fast iterative reconstruction of differential phase contrast X-ray tomograms - Optics Express, 21(5): 5511-5528, December 2013
Nilchian M, Vonesch C, Lefkimmiatis S, Modregger P, Stampanoni M, Unser M. Constrained regularized reconstruction of X-ray-DPCI tomograms with weighted-norm - Optics Express, 21(26): 32340-32348, December 2013