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Bach Cuadra M, Favre J, Omoumi P. Quantification in Musculoskeletal Imaging Using Computational Analysis and Machine Learning: Segmentation and Radiomics - Seminars in Musculoskeletal Radiology, 24(1): 50-64, February 2020

Maggi P, Fartaria M, Jorge J, La Rosa F, Absinta M, Sati P, Meuli R, Du Pasquier R, Reich D, Bach Cuadra M, Granziera C, Richiardi J, Kober T. CVSnet: A machine learning approach for automated central vein sign assessment in multiple sclerosis - NMR in Biomedicine, : , March 2020

De Zanet SI, Ciller C, Rudolph T, Maeder P, Munier F, Balmer A, Bach Cuadra M, Kowal JH. Landmark Detection for Fusion of Fundus and MRI Towards a Patient-Specific Multi-Modal Eye Model - IEEE Transactions on Biomedical Engineering, 62(2): 532-40, February 2015

Daducci A, Dal Palu A, Lemkaddem A, Thiran JP. COMMIT: Convex Optimization Modeling for Microstructure Informed Tractography - IEEE Transactions on Medical Imaging, 34(1): 246-57, January 2015

Daducci A, Canales-Rodríguez EJ, Zhang H, Dyrby TB, Alexander DC, Thiran J. Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data - NeuroImage, 105: 32-44, January 2015

Ciller C, De Zanet S, Rüegsegger MB, Pica A, Sznitman R, Thiran JP, Maeder P, Munier FL, Kowal JH, Bach Cuadra M. Automatic Segmentation of the Eye in 3D Magnetic Resonance Imaging: A Novel Statistical Shape Model for Treatment Planning of Retinoblastoma - International Journal of Radiation Oncology, Biology, Physics, 92(4): 794-802, July 2015

Bonnier G, Roche A, Romascano D, Simioni S, Meskaldji DE, Rotzinger D, Lin YC, Menegaz G, Schluep M, Du Pasquier R, Sumpf TJ, Frahm J, Thiran JP, Krueger G, Granziera C. Multicontrast MRI Quantification of Focal Inflammation and Degeneration in Multiple Sclerosis - BioMed Research International, : 569123, July 2015

Auría A, Daducci A, Thiran JP, Wiaux Y. Structured sparsity for spatially coherent fibre orientation estimation in diffusion MRI - NeuroImage, 115: 245-55, July 2015

Behjat H, Leonardi N, Sornmo L, Van De Ville D. Anatomically-adapted graph wavelets for improved group-level fMRI activation mapping - NeuroImage, 123: 185-99, December 2015

Tourbier S, Bresson X, Hagmann P, Thiran J-P, Meuli R, Bach Cuadra M. Efficient Total Variation Algorithm for Fetal Brain MRI Reconstruction - NeuroImage, 118: 584-97, September 2015

Rueda S, Fathima S, Knight CL, Yaqub M, Papageorghiou AT, Rahmatullah B, Foi A, Maggioni M, Pepe A, Tohka J, Stebbing R, Mcmanigle J, Ciurte A, Bresson, X, Bach Cuadra M, Sun C, Ponomarev G, Gelfand M, Kazanov M, Wang C, Chen H, Peng C, Hung C, Noble A. Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge - IEEE Transactions on Medical Imaging, 33(4): 797 - 813, August 2013

Leonardi N, Shirer WR, Greicius MD, Van De Ville D. Disentangling dynamic networks: Separated and joint expressions of functional connectivity patterns in time - Human Brain Mapping, 35(12): 5984-95, December 2014

Lemkaddem A, Skiöldebrand D, Dal Palú A, Thiran J-P, Daducci A. Global tractography with embedded anatomical priors for quantitative connectivity analysis - Frontiers in Neuroscience, 5: 232, November 2014

Lemkaddem A, Daducci A, Kunz N, Lazeyras F, Seeck M, Thiran J-P, Vulliemoz S. Connectivity and tissue microstructural alterations in right and left temporal lobe epilepsy revealed by diffusion spectrum imaging - NeuroImage: Clinical, 5: 349-358, December 2014

Foncubierta-Rodríguez A, Müller H, Depeursinge A. Retrieval of high-dimensional visual data: current state, trends and challenges ahead - Multimedia Tools and Applications, 69: 539–567, January 2013

Esteban O, Wollny G, Gorthi S, Ledesma-Carbayo MJ, Thiran JP, Santos A, Bach Cuadra M. MBIS: Multivariate Bayesian Image Segmentation tool - Computer Methods and Programs in Biomedicine, 115(2): 76-94, 2014

Emmert K, Breimhorst M, Bauermann T, Birklein F, Van De Ville D, Haller S. Comparison of anterior cingulate versus insular cortex as targets for real-time fMRI regulation during pain stimulation - Frontiers in Behavioral Neuroscience, 8: 350, October 2014

Depeursinge A, Foncubierta-Rodriguez A, Van De Ville D, Muller H. Three-dimensional solid texture analysis in biomedical imaging: review and opportunities - Medical Image Analysis, 18(1): 176-96, January 2014

Depeursinge A, Foncubierta-Rodriguez A, Van de Ville D, Muller H. Rotation-Covariant Texture Learning Using Steerable Riesz Wavelets - IEEE Transactions on Image Processing, 23(2): 898 - 908, December 2013

Daducci A, Van De Ville D, Thiran JP, Wiaux Y. Sparse regularization for fiber ODF reconstruction: From the suboptimality of l and l priors to l - Medical Image Analysis, 18(6): 820-33, August 2014

Ciurte A, Bresson X, Cuisenaire O, Houhou N, Nedevschi S, Thiran JP, Bach Cuadra M. Semi-supervised segmentation of ultrasound images based on patch representation and continuous min cut - PLOS One, 9(7): e100972, July 2014

Carrillo RE, McEwen JD, Wiaux Y. PURIFY: a new approach to radio-interferometric imaging - Monthly Notices of the Royal Astronomical Society, 439(4): 3591-604, February 2014

Bonanno G, Puy G, Wiaux Y, van Heeswijk RB, Piccini D, Stuber M. Self-Navigation with Compressed Sensing for 2D Translational Motion Correction in Free-Breathing Coronary MRI: A Feasibility Study - PLOS One, 9(8): e105523, August 2014

Auria A, Carrillo R, Thiran JP, Wiaux Y. Tensor optimization for optical-interferometric imaging - Monthly Notices of the Royal Astronomical Society, 437(3): 2083–2091, January 2014

Wolz L, McEwen JD, Abdalla FB, Carrillo RE, Wiaux Y. Revisiting the spread spectrum effect in radio interferometric imaging: a sparse variant of the w-projection algorithm - Monthly Notices of the Royal Astronomical Society, 436(3): 1993-2003, December 2013

Unser M, Chenouard N. A Unifying Parametric Framework for 2D Steerable Wavelet Transforms - SIAM Journal on Imaging Sciences, 6(1): 102-35, January 2013

Sulzer J, Haller S, Scharnowski F, Weiskopf N, Birbaumer N, Blefari ML, Bruehl AB, Cohen LG, DeCharms RC, Gassert R, Goebel R, Herwig U, LaConte S, Linden D, Luft A, Seifritz E, Sitaram R. Real-time fMRI neurofeedback: Progress and challenges - NeuroImage, 76: 386-99, August 2013

Schrouff J1, Rosa MJ, Rondina JM, Marquand AF, Chu C, Ashburner J, Phillips C, Richiardi J, Mourão-Miranda J. PRoNTo: Pattern Recognition for Neuroimaging Toolbox - Neuroinformatics, 11(3): 319-37, July 2013

Scharnowski F, Rees G, Walsh V.. Time and the brain: neurorelativity: The chronoarchitecture of the brain from the neuronal rather than the observer’s perspective - Trends in Cognitive Sciences, 17(2): 51-2, February 2013

Santarnecchi E1, Sicilia I, Richiardi J, Vatti G, Polizzotto NR, Marino D, Rocchi R, Van De Ville D, Rossi A.. Altered cortical and subcortical local coherence in obstructive sleep apnoea: a functional magnetic resonance imaging study - Journal of Sleep Research, 22(3): 337-47, June 2013

Richiardi J, Achard S, Bunke H, Van De Ville D. Machine Learning with Brain Graphs: Predictive Modeling Approaches for Functional Imaging in Systems Neuroscience - IEEE Signal Processing Magazine, 30(3): 58 - 70, April 2013

Pignat JM, Koval O, Van De Ville D, Voloshynovskiy S, Michel C, Pun T. The impact of denoising on independent component analysis of functional magnetic resonance imaging data - Journal of Neuroscience Methods, 213(1): 105-22, February 2013

Ottet MC, Schaer M, Cammoun L, Schneider M, Debbané M, Thiran JP, Eliez S. Reduced Fronto-Temporal and Limbic Connectivity in the 22q11.2 Deletion Syndrome: Vulnerability Markers for Developing Schizophrenia? - PLOS One, 8(3): e58429, March 2013

Ottet MC, Schaer M, Debbane M, Cammoun L, Thiran JP, Eliez S. Graph theory reveals dysconnected hubs in 22q11DS and altered nodal efficiency in patients with hallucinations - Frontiers in Human Neuroscience, 7: 402, September 2013

Nilchian M, Vonesch C, Modregger P, Stampanoni M, Unser M. Fast iterative reconstruction of differential phase contrast X-ray tomograms - Optics Express, 21(5): 5511-5528, December 2013

Nilchian M, Vonesch C, Lefkimmiatis S, Modregger P, Stampanoni M, Unser M. Constrained regularized reconstruction of X-ray-DPCI tomograms with weighted-norm - Optics Express, 21(26): 32340-32348, December 2013

McEwen JD, Vandergheynst P, Wiaux Y. On the computation of directional scale-discretized wavelet transforms on the sphere - Wavelets and Sparsity XV, : , San Diego, CA, USA, August 2013

McEwen J, Puy G, Thiran J, Vandergheynst P, Van De Ville D, Wiaux Y. Sparse image reconstruction on the sphere: implications of a new sampling theorem - IEEE Transactions on Image Processing, 22(6): 2275-85, April 2013

Leonardi N, Van De Ville D. Tight Wavelet Frames on Multislice Graphs - IEEE Transactions on Signal Processing, 61(13): 3357 - 3367, April 2013

Leonardi N, Richiardi J, Gschwind M, Simioni S, Annoni JM, Schluep M, Vuilleumier P, Van De Ville D.. Principal components of functional connectivity: A new approach to study dynamic brain connectivity during rest - NeuroImage, 83: 937-50, December 2013

Leistedt B, McEwen JD, Vandergheynst P, Wiaux Y. S2LET: A code to perform fast wavelet analysis on the sphere - Astronomy & Astrophysics, 558: A128, September 2013

Lascano AM, Lemkaddem A, Granziera C, Korff CM, Boex C, Jenny B, Schmitt-Mechelke T, Thiran JP, Garibotto V, Vargas MI, Schaller K, Seeck M, Vulliemoz S.. Tracking the source of cerebellar epilepsy: Hemifacial seizures associated with cerebellar cortical dysplasia - Epilepsy Research, 105(1-2): 245-9, July 2013

Koush Y, Rosa MJ, Robineau F, Heinen K, W Rieger S, Weiskopf N, Vuilleumier P, Van De Ville D, Scharnowski F. Connectivity-based neurofeedback: Dynamic causal modeling for real-time fMRI - NeuroImage, 81: 422-430, November 2013

Khalid Z, Kennedy RA, Durrani S, Sadeghi P, Wiaux Y, McEwen JD. Fast Directional Spatially Localized Spherical Harmonic Transform - IEEE Transactions on Signal Processing, 61(9): , July 2012

Kasten J, Lazeyras F, Van De Ville D. Data-Driven MRSI Spectral Localization Via Low-Rank Component Analysis - IEEE Transactions on Medical Imaging, 32(10): 1853-63, October 2013

Karahanoğlu FI, Caballero-Gaudes C, Lazeyras F, Van De Ville D. Total activation: fMRI deconvolution through spatio-temporal regularization - NeuroImage, 73: 121-34, June 2013

Haller S, Kopel R, Jhooti P, Haas T, Scharnowski F, Lovblad K-O, Scheffler K, Van de Ville D. Dynamic reconfiguration of human brain functional networks through neurofeedback - NeuroImage, 81: 243-252, November 2013

Granziera C, Romascano D, Daducci A, Roche A, Vincent M, Krueger G, Hadjikhani N.. Migraineurs without aura show microstructural abnormalities in the cerebellum and frontal lobe - The Cerebellum, 12(6): 812-8, December 2013

Gorthi S, Bach Cuadra M, Tercier PA, Allal AS, Thiran JP. Weighted Shape-Based Averaging With Neighborhood Prior Model for Multiple Atlas Fusion-Based Medical Image Segmentation - IEEE Signal Processing Letters, 20(11): 1034 - 1037, August 2013

Gigandet X, Griffa A, Kober T, Daducci A, Gilbert G, Connelly A, Hagmann P, Meuli R, Thiran JP, Krueger G. A Connectome-Based Comparison of Diffusion MRI Schemes - PLOS One, 8(9): e75061, September 2013

Foncubierta–Rodríguez A, Vargas A, Platon A, Poletti PA, Müller H, Depeursinge A. Retrieval of 4D Dual Energy CT for Pulmonary Embolism Diagnosis - Medical Content-Based Retrieval for Clinical Decision Support, : 45-55, October 2012

Doğan Z, Jovanovic I, Blu T, Van De Ville D. Application of a new sensing principle for photoacoustic imaging of point absorbers - Proceedings of SPIE, : 85813Z, March 2013

Depeursinge A, Foncubierta A, Muller H, Van de Ville D. Rotation-covariant visual concept detection using steerable Riesz wavelets and bags of visual words - SPIE Wavelets and Sparsity XV, : , San Diego, CA, USA, August 2013

Carrillo RE, McEwen JD, Van de Ville D, Thiran JP, Wiaux Y. Sparsity Averaging for Compressive Imaging - IEEE Signal Processing Letters, 20(6): 591 - 594, April 2013

Caballero Gaudes C, Petridou N, Francis ST, Dryden IL, Gowland PA. Paradigm free mapping with sparse regression automatically detects single-trial functional magnetic resonance imaging blood oxygenation level dependent responses - Human Brain Mapping, 34(3): 501-18, March 2013