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Klug J, Dirren E, Preti M, Machi P, Kleinschmidt A, Vargas Gomez M, Van De Ville D, Carrera E. Integrating regional perfusion CT information improves prediction of infarction after stroke - Journal of Cerebral Blood Flow & Metabolism, 41(3): 502-510, March 2021

La Rosa F, Yu T, Barquero G, Thiran JP, Granziera C, Cuadra MB. MPRAGE to MP2RAGE UNI translation via generative adversarial network improves the automatic tissue and lesion segmentation in multiple sclerosis patients - Computers in Biology and Medicine, 132(104297): , May 2021

Barakovic M, Tax C, Rudrapatna U, Chamberland M, Rafael-Patino J, Granziera C, Thiran JP, Daducci A, Canales-Rodríguez EJ, Jones DK. Resolving bundle-specific intra-axonal T2 values within a voxel using diffusion-relaxation tract-based estimation - NeuroImage, 227(117617): , February 2021

Niendorf T, Beenakker J, Langner S, Erb-Eigner K, Bach Cuadra M, Beller E, Millward JM, Niendorf TM, Stachs O. Ophthalmic Magnetic Resonance Imaging: Where Are We (Heading To)? - Current Eye Research, : , February 2021

Gauthier B, Brechet L, Lance F, Mange R, Herbelin B, Faivre N, Bolton TAW, Van De Ville D, Blanke O. First-person body view modulates the neural substrates of episodic memory and autonoetic consciousness: A functional connectivity study - NeuroImage, 223: , December 2020

Lu P.J., Yoo Y., Rahmanzadeh R., Galbusera R, Weigel, M., Ceccaldi P., Nguyen T. D., Spincemaille P., Wang Y., Daducci A., La Rosa F., Bach Cuadra M., Sandkühler R., Nael K., Doshi A., Fayad Z.A., Kuhle J., Kappos L., Granziera C. GAMER MRI: Gated-attention mechanism ranking of multi-contrast MRI in brain pathology - Neuroimage Clinical, 29(102522): , December 2020

Bohra P, Campos J, Gupta H, Aziznejad S, Unser M. Learning Activation Functions in Deep (Spline) Neural Networks - IEEE Open Journal of Signal Processing, 1: 295 - 309, November 2020

Girard G, Caminiti R, Battaglia-Mayer A, St-Onge E, Ambrosen KS, Eskildsen SF, Krug K, Dyrby TB, Descoteaux M, Thiran JP, Innocenti GM. On the cortical connectivity in the macaque brain: A comparison of diffusion tractography and histological tracing data - NeuroImage, 221: , November 2020

Bozorgtabar B, Mahapatra D, Vray G, Thiran JP. SALAD: Self-supervised Aggregation Learning for Anomaly Detection on X-Rays - International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), : 468-478, October 2020

Rensonnet G, Rafael-Patino J, Macq B, Thiran JP, Pizzolato M, Girard G. A Signal Peak Separation Index for axisymmetric B-tensor encoding - MICCAI 2020 International Workshop on Computational Diffusion MRI, : , October 2020

Todea RA , Lu PJ. , Fartaria de Oliveira MJ, Bonnier G , Du Pasquier R. , Krueger G. , Bach Cuadra M. , Psychogios M. N., Kappos L. , Kuhle J. , Granziera C. Evolution of cortical and white matter lesion load in early-stage multiple sclerosis: correlation with neuroaxonal damage and clinical changes - Frontiers in Neurology, 11(973): , September 2020

Barquero G., La Rosa F., Kebiri H., Lu P.-J., Rahmanzadeh R., Weigel M., Fartaria M. J., Kober T., Théaudin M., Du Pasquier R., Sati P., Reich D. S., Absinta M., Granziera C., Maggi P., Bach Cuadra M. RimNet: A deep 3D multimodal MRI architecture for paramagnetic rim lesion assessment in multiple sclerosis - NeuroImage: Clinical, 28(102412): , September 2020

La Rosa F, Beck ES, Abdulkadir A, Thiran JP, Reich DS, Sati P, Bach Cuadra M. Automated Detection of Cortical Lesions in Multiple Sclerosis Patients with 7T MRI - International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), : , August 2020

Abbet C, Zlobec I, Bozorgtabar B, Thiran JP. Divide-and-Rule: Self-Supervised Learning for Survival Analysis in Colorectal Cancer - International Conference on Medical Image Computing and Computer-Assisted Intervention, : 480-489, July 2020

Lajous H, Hilbert T, Roy CW, Tourbier S, de Dumast P, Yu T, Thiran JP, Ledoux JB, Piccini D, Hagmann P, Meuli R, Kober T, Stuber M, van Heeswijk RB, Bach Cuadra M. T2 Mapping from Super-Resolution-Reconstructed Clinical Fast Spin Echo Magnetic Resonance Acquisitions - International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), : 114-124, July 2020

Yu T, Canales-Rodríguez EJ, Pizzolato M, Piredda G, Hilbert T, Fischi-Gomez E, Weigel M, Barakovic M, Bach Cuadra M, Granziera C, Kober T, Thiran JP. Model-Informed Machine Learning for Multi-component T2 Relaxometry - Medical image Analysis, 69(101940): , April 2021

Alemán Y., Najdenovska E., Roine T., Fartaria M. J., Canales-Rodríguez E. J., Rovó Z., Hagmann P., Conus P., Do K. Q., Klauser P., Steullet P., Baumann P. S., Bach Cuadra M. Partial‐volume modeling reveals reduced gray matter in specific thalamic nuclei early in the time course of psychosis and chronic schizophrenia - Human Brain Mapping, 41(14): 4041-4061, July 2020

Bozorgtabar B, Mahapatra D, Zlobec I, Rau T, Thiran JP. Computational pathology - Frontiers in Medicine, : , June 2020

Marcadent S, Hofmeister J, Preti MG, Martin S, Van De Ville D, Montet X. Generative adversarial networks improve the reproducibility and discriminative power of radiomics features - Radiology: Artificial Intelligence, 2(3): , May 2020

Piccini D, Demesmaeker R, Heerfordt J, Yerly J, Di Sopra L, Masci PG, Schwitter J, Van De Ville D, Richiardi J, Kober T, Stuber M. Deep Learning to Automate Reference-Free Image Quality Assessment of Whole-Heart MR Images - Radiology: Artificial Intelligence, 2(3): e190123, May 2020

Bach Cuadra M, Favre J, Omoumi P. Quantification in Musculoskeletal Imaging Using Computational Analysis and Machine Learning: Segmentation and Radiomics - Seminars in Musculoskeletal Radiology, 24(1): 50-64, February 2020

Siffredi V, Preti MG, Kebets V, Obertino S, Leventer RJ, McIlroy A, Wood A, Anderson V, Spencer-Smith M, Van De Ville D. Structural neuroplastic responses preserve functional connectivity and neurobehavioural outcomes in children born without corpus callosum - Cerebral Cortex, 31: 1227-1239, May 2020

Pugin D, Hofmeister J, Gasche Y, Vulliemoz S, Lovblad KO, Van De Ville D, Haller S. Resting-state brain activity for early prediction outcome in post-anoxic comatose patients with indeterminate clinical prognosis - American Journal of Neuroradiology, 41: 1022-1030, May 2020

Maggi P, Fartaria M, Jorge J, La Rosa F, Absinta M, Sati P, Meuli R, Du Pasquier R, Reich D, Bach Cuadra M, Granziera C, Richiardi J, Kober T. CVSnet: A machine learning approach for automated central vein sign assessment in multiple sclerosis - NMR in Biomedicine, : , March 2020

De Zanet SI, Ciller C, Rudolph T, Maeder P, Munier F, Balmer A, Bach Cuadra M, Kowal JH. Landmark Detection for Fusion of Fundus and MRI Towards a Patient-Specific Multi-Modal Eye Model - IEEE Transactions on Biomedical Engineering, 62(2): 532-40, February 2015

Daducci A, Dal Palu A, Lemkaddem A, Thiran JP. COMMIT: Convex Optimization Modeling for Microstructure Informed Tractography - IEEE Transactions on Medical Imaging, 34(1): 246-57, January 2015

Daducci A, Canales-Rodríguez EJ, Zhang H, Dyrby TB, Alexander DC, Thiran J. Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data - NeuroImage, 105: 32-44, January 2015

Ciller C, De Zanet S, Rüegsegger MB, Pica A, Sznitman R, Thiran JP, Maeder P, Munier FL, Kowal JH, Bach Cuadra M. Automatic Segmentation of the Eye in 3D Magnetic Resonance Imaging: A Novel Statistical Shape Model for Treatment Planning of Retinoblastoma - International Journal of Radiation Oncology, Biology, Physics, 92(4): 794-802, July 2015

Bonnier G, Roche A, Romascano D, Simioni S, Meskaldji DE, Rotzinger D, Lin YC, Menegaz G, Schluep M, Du Pasquier R, Sumpf TJ, Frahm J, Thiran JP, Krueger G, Granziera C. Multicontrast MRI Quantification of Focal Inflammation and Degeneration in Multiple Sclerosis - BioMed Research International, : 569123, July 2015

Auría A, Daducci A, Thiran JP, Wiaux Y. Structured sparsity for spatially coherent fibre orientation estimation in diffusion MRI - NeuroImage, 115: 245-55, July 2015

Behjat H, Leonardi N, Sornmo L, Van De Ville D. Anatomically-adapted graph wavelets for improved group-level fMRI activation mapping - NeuroImage, 123: 185-99, December 2015

Tourbier S, Bresson X, Hagmann P, Thiran J-P, Meuli R, Bach Cuadra M. Efficient Total Variation Algorithm for Fetal Brain MRI Reconstruction - NeuroImage, 118: 584-97, September 2015

Rueda S, Fathima S, Knight CL, Yaqub M, Papageorghiou AT, Rahmatullah B, Foi A, Maggioni M, Pepe A, Tohka J, Stebbing R, Mcmanigle J, Ciurte A, Bresson, X, Bach Cuadra M, Sun C, Ponomarev G, Gelfand M, Kazanov M, Wang C, Chen H, Peng C, Hung C, Noble A. Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge - IEEE Transactions on Medical Imaging, 33(4): 797 - 813, August 2013

Leonardi N, Shirer WR, Greicius MD, Van De Ville D. Disentangling dynamic networks: Separated and joint expressions of functional connectivity patterns in time - Human Brain Mapping, 35(12): 5984-95, December 2014

Lemkaddem A, Skiöldebrand D, Dal Palú A, Thiran J-P, Daducci A. Global tractography with embedded anatomical priors for quantitative connectivity analysis - Frontiers in Neuroscience, 5: 232, November 2014

Lemkaddem A, Daducci A, Kunz N, Lazeyras F, Seeck M, Thiran J-P, Vulliemoz S. Connectivity and tissue microstructural alterations in right and left temporal lobe epilepsy revealed by diffusion spectrum imaging - NeuroImage: Clinical, 5: 349-358, December 2014

Foncubierta-Rodríguez A, Müller H, Depeursinge A. Retrieval of high-dimensional visual data: current state, trends and challenges ahead - Multimedia Tools and Applications, 69: 539–567, January 2013

Esteban O, Wollny G, Gorthi S, Ledesma-Carbayo MJ, Thiran JP, Santos A, Bach Cuadra M. MBIS: Multivariate Bayesian Image Segmentation tool - Computer Methods and Programs in Biomedicine, 115(2): 76-94, 2014

Emmert K, Breimhorst M, Bauermann T, Birklein F, Van De Ville D, Haller S. Comparison of anterior cingulate versus insular cortex as targets for real-time fMRI regulation during pain stimulation - Frontiers in Behavioral Neuroscience, 8: 350, October 2014

Depeursinge A, Foncubierta-Rodriguez A, Van De Ville D, Muller H. Three-dimensional solid texture analysis in biomedical imaging: review and opportunities - Medical Image Analysis, 18(1): 176-96, January 2014

Depeursinge A, Foncubierta-Rodriguez A, Van de Ville D, Muller H. Rotation-Covariant Texture Learning Using Steerable Riesz Wavelets - IEEE Transactions on Image Processing, 23(2): 898 - 908, December 2013

Daducci A, Van De Ville D, Thiran JP, Wiaux Y. Sparse regularization for fiber ODF reconstruction: From the suboptimality of l and l priors to l - Medical Image Analysis, 18(6): 820-33, August 2014

Ciurte A, Bresson X, Cuisenaire O, Houhou N, Nedevschi S, Thiran JP, Bach Cuadra M. Semi-supervised segmentation of ultrasound images based on patch representation and continuous min cut - PLOS One, 9(7): e100972, July 2014

Carrillo RE, McEwen JD, Wiaux Y. PURIFY: a new approach to radio-interferometric imaging - Monthly Notices of the Royal Astronomical Society, 439(4): 3591-604, February 2014

Bonanno G, Puy G, Wiaux Y, van Heeswijk RB, Piccini D, Stuber M. Self-Navigation with Compressed Sensing for 2D Translational Motion Correction in Free-Breathing Coronary MRI: A Feasibility Study - PLOS One, 9(8): e105523, August 2014

Auria A, Carrillo R, Thiran JP, Wiaux Y. Tensor optimization for optical-interferometric imaging - Monthly Notices of the Royal Astronomical Society, 437(3): 2083–2091, January 2014

Wolz L, McEwen JD, Abdalla FB, Carrillo RE, Wiaux Y. Revisiting the spread spectrum effect in radio interferometric imaging: a sparse variant of the w-projection algorithm - Monthly Notices of the Royal Astronomical Society, 436(3): 1993-2003, December 2013

Unser M, Chenouard N. A Unifying Parametric Framework for 2D Steerable Wavelet Transforms - SIAM Journal on Imaging Sciences, 6(1): 102-35, January 2013

Sulzer J, Haller S, Scharnowski F, Weiskopf N, Birbaumer N, Blefari ML, Bruehl AB, Cohen LG, DeCharms RC, Gassert R, Goebel R, Herwig U, LaConte S, Linden D, Luft A, Seifritz E, Sitaram R. Real-time fMRI neurofeedback: Progress and challenges - NeuroImage, 76: 386-99, August 2013

Schrouff J1, Rosa MJ, Rondina JM, Marquand AF, Chu C, Ashburner J, Phillips C, Richiardi J, Mourão-Miranda J. PRoNTo: Pattern Recognition for Neuroimaging Toolbox - Neuroinformatics, 11(3): 319-37, July 2013

Scharnowski F, Rees G, Walsh V.. Time and the brain: neurorelativity: The chronoarchitecture of the brain from the neuronal rather than the observer’s perspective - Trends in Cognitive Sciences, 17(2): 51-2, February 2013

Santarnecchi E1, Sicilia I, Richiardi J, Vatti G, Polizzotto NR, Marino D, Rocchi R, Van De Ville D, Rossi A.. Altered cortical and subcortical local coherence in obstructive sleep apnoea: a functional magnetic resonance imaging study - Journal of Sleep Research, 22(3): 337-47, June 2013

Richiardi J, Achard S, Bunke H, Van De Ville D. Machine Learning with Brain Graphs: Predictive Modeling Approaches for Functional Imaging in Systems Neuroscience - IEEE Signal Processing Magazine, 30(3): 58 - 70, April 2013

Pignat JM, Koval O, Van De Ville D, Voloshynovskiy S, Michel C, Pun T. The impact of denoising on independent component analysis of functional magnetic resonance imaging data - Journal of Neuroscience Methods, 213(1): 105-22, February 2013

Ottet MC, Schaer M, Cammoun L, Schneider M, Debbané M, Thiran JP, Eliez S. Reduced Fronto-Temporal and Limbic Connectivity in the 22q11.2 Deletion Syndrome: Vulnerability Markers for Developing Schizophrenia? - PLOS One, 8(3): e58429, March 2013