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Bolton TA, Van De Ville D, Amico E, Preti MG, Liégeois R. The arrow-of-time in neuroimaging time series identifies causal triggers of brain function - Human Brain Mapping, : , May 2023

Gardier R, Villarreal Haro JL, Canales-Rodriguez EJ, Jelescu IO, Girard G, Rafael-Patino J, Thiran JP. Cellular EXchange Imaging (CEXI): Evaluation of a diffusion model including water exchange in cells using numerical phantoms of permeable spheres - arXiv:2303.16112 [eess.SP], : , April 2023

del Aguila Pla P, Boquet-Pujadas A, Jalden J. Convex Quantization Preserves Logconcavity - IEEE Signal Processing Letters, 29: 2697–2701, December 2022

Bulcke CV, Wynen M, Detobel J, La Rosa F, Absinta M, Dricot L, Macq B, Bach Cuadra M, Maggi P. BMAT: An open-source BIDS managing and analysis tool - Neuroimage: Clinical, 36: 2213-1582, October 2022

Dechantsreiter E, Padberg F, Morash A, Kumpf U, Nguyen A, Menestrina Z, Windel F, Burkhardt G, Goerigk S, Morishita T, Soldini A, Ahissar S, Cohen T, Pasqualotto A, Rubene L, Konosonoka L, Keeser D, Zill P, Assi R, Gardier R, Viñals R, Thiran JP, Segman R, Benjamini Y, Bonne O, Hummel FC, Bavelier D, Rancans E, Nahum M. Examining the synergistic effects of a cognitive control video game and a home-based, self-administered non-invasive brain stimulation on alleviating depression: the DiSCoVeR trial protocol - European Archives of Psychiatry and Clinical Neuroscience, 273(1): 85-98, October 2022

Fleury L, Koch PJ, Wessel MJ, Bonvin C, San Millan D, Constantin C, Vuadens P, Adolphsen J, Cadic Melchior A, Brügger J, Beanato E, Ceroni M, Menoud P, De Leon Rodriguez D, Zufferey V, Meyer NH, Egge P, Harquel S, Popa T, Estelle Raffin E, Girard G, Thiran JP, Vaney C, Alvarez V, Turlan JL, Mühl A, Léger B, Morishita T, Micera S, Blanke O, Van De Ville D, Hummel FC. Toward individualized medicine in stroke—The TiMeS project: Protocol of longitudinal, multi-modal, multi-domain study in stroke - Frontiers in Neurology, 13: 939640, September 2022

La Rosa F, Wynen M, Al-Louzi O, Beck ES, Huelnhagen T, Maggi P, Thiran JP, Kober T, Shinohara RT, Sati P, Reich DS, Granziera C, Absinta M, Bach Cuadra M. Cortical lesions, central vein sign, and paramagnetic rim lesions in multiple sclerosis: Emerging machine learning techniques and future avenues - NeuroImage: Clinical, 36: 103205, September 2022

Taymourtash A, Kebiri H, Schwartz E, Nenning KH, Tourbier S, Kasprian G, Prayer D, Bach Cuadra M, Langs G. Spatio-temporal motion correction and iterative reconstruction of in-utero fetal fMRI - Medical Image Computing and Computer Assisted Intervention – MICCAI 2022, 13436: 603-612, September 2022

Rahmanzadeh R, Galbusera R, Lu PJ, Bahn E, Weigel M, Barakovic M, Franz J, Nguyen TD, Spincemaille P, Schiavi S, Daducci A, La Rosa F, Absinta M, Sati P, Bach Cuadra M, Radue EW, Leppert D, Kuhle J, Kappos L, Brück W, Reich DS, Stadelmann C, Wang Y, Granziera C. A new advanced MRI biomarker for remyelinated lesions in multiple sclerosis - Annals of Neurology, 92: 486-502, September 2022

D. Tomar, B. Bozorgtabar, M. Lortkipanidze, G. Vray, M.S. Rad, J.-Ph. Thiran. Self-Supervised Generative Style Transfer for One-Shot Medical Image Segmentation - Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, : 1998-2008, July 2022

Yu T, Hilbert T, Piredda GF, Joseph A, Bonanno G, Zenkhri S, Omoumi P, Bach Cuadra M, Canales-Rodriguez EJ, Kober T, Thiran JP. Validation and generalizability of self-supervised image reconstruction methods for undersampled MRI - Journal of Machine Learning for Biomedical Imaging, 22: 1-31, September 2022

Alemán-Gómez Y, Baumgartner T, Klauser P, Cleusix M, Jenni R, Hagmann P, Conus P, Do KQ, Bach Cuadra M, Baumann PS, Steullet P. Multimodal magnetic resonance imaging depicts widespread and subregion specific anomalies in the thalamus of early-psychosis and chronic schizophrenia patients - Schizophrenia Bulletin, 49(1): 196–207, September 2022

Müller J, La Rosa F, Beaumont J, Tsagkas C, Rahmanzadeh R, Weigel M, Bach Cuadra M, Gambarota G, Granziera C. Fluid and White Matter Suppression: New Sensitive 3 T Magnetic Resonance Imaging Contrasts for Cortical Lesion Detection in Multiple Sclerosis - Investigative Radiology, 1;57(9): 592-600, September 2022

Griffa A, Preti M G. Brain structure-function coupling is unique to individuals across multiple frequency bands: a graph signal processing study - 30th European Signal Processing Conference (EUSIPCO), : , Belgrade, Serbia, August 2022

Aleman-Gómez Y, Griffa A, Houde JC, Najdenovska E, Magon S, Bach Cuadra M, Descoteaux M, Hagmann P. A multi-scale probabilistic atlas of the human connectome - Scientific Data, 516: , August 2022

Omidvarnia A, Liégeois R, Amico E, Preti MG, Zalesky A, Van De Ville D. On the Spatial Distribution of Temporal Complexity in Resting State and Task Functional MRI - Entropy, 24: 1148, August 2022

Di Noto T, Marie G, Tourbier S, Alemán-Gómez Y, Esteban O, Saliou G, Bach Cuadra M, Hagmann P, Richiardi J. Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and anatomical knowledge - Neuroinformatics, 21(1): 21-34, August 2022

Maffei C, Girard G, Schilling KG, Baran Aydogan D, Adluru N, Zhylka A, Wu Y, Mancini M, Hamamci A, Sarica A, Teillac A, Baete SH, Karimi D, Yeh FC, Yildiz ME, Gholipour A, Bihan-Poudec Y, Hiba B, Quattrone A, Quattrone A, Boshkovski T, Stikov N, Yap PT, de Luca A, Pluim J, Leemans A, Prabhakaran V, Bendlin BB, Alexander AL, Landman BA, Canales-Rodríguez EJ, Barakovic M, Rafael-Patino J, Yu T, Rensonnet G, Schiavi S, Daducci A, Pizzolato M, Fischi-Gomez E, Thiran JP, Dai G, Grisot G, Lazovski N, Puch S, Ramos M, Rodrigues P, Prčkovska V, Jones R, Lehman J, Haber SN, Yendiki A. Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI - NeuroImage, 257: 119327, August 2022

Koch PJ, Girard G, Brügger J, Cadic-Melchior AG, Beanato E, Park CH, Morishita T, Wessel MJ, Pizzolato M, Canales-Rodríguez EJ, Fischi-Gomez E, Schiavi S, Daducci A, Piredda GF, Hilbert T, Kober T, Thiran JP, Hummel FC. Evaluating reproducibility and subject-specificity of microstructure-informed connectivity - NeuroImage, 258: 119356, July 2022

Fischi-Gomez E, Girard G, Koch PJ, Yu T, Pizzolato M, Brügger J, Piredda GF, Hilbert T, Cadic-Melchior AG, Beanato E, Park C-H, Morishita T, Wessel MJ, Schiavi S, Daducci A, Kober T, Canales-Rodríguez EJ, Hummel FC, Thiran JP. Variability and reproducibility of multi-echo T2 relaxometry: Insights from multi-site, multi-session and multi-subject MRI acquisitions - Frontiers in Radiology, 2: 930666, July 2022

Abbet Ch, Studer L, Fischer A, Dawson H, Zlobec I, Bozorgtabar B, Thiran JP. Self-rule to multi-adapt: Generalized multi-source feature learning using unsupervised domain adaptation for colorectal cancer tissue detection - Medical Image Analysis, 79: 102473, July 2022

Tourbier S, Rue-Queralt J, Glomb K, Aleman-Gomez Y, Mullier E, Griffa A, Schöttner M, Wirsich J, Tuncel MA, Jancovic J, Bach Cuadra M, Hagmann P. Connectome mapper 3: A flexible and open-source pipeline software for multiscale multimodal human connectome mapping - Journal of Open Source Software, 7(74): 4248, June 2022

Bortolin K, Delavari F, Preti MG, Sandini C, Mancini V, Mullier E, Van De Ville D, Eliez S. Neural substrates of psychosis revealed by altered dependencies between brain activity and white-matter architecture in individuals with 22q11 deletion syndrome - NeuroImage: Clinical, 35: 103075, June 2022

Lajous H, Roy CW, Hilbert T, de Dumast P, Tourbier S, Alemán-Gómez Y, Yerly J, Yu T, Kebiri H, Payette K, Ledoux JB, Meuli R, Hagmann P, Jakab A, Dunet V, Koob M, Kober T, Stuber M, Bach Cuadra M. A fetal brain Magnetic Resonance acquisition numerical phantom (FaBiAN) - Scientific Reports, 12: 8682, May 2022

del Aguila Pla P, Unser M. Bona fide Riesz projections for density estimation - 2022 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), : 5613-5616, Singapore, May 2022

Griffa A, Bommarito G, Assal F, Preti MG, Goldstein R, Armand S, Herrmann FR, Van De Ville D, Allali G. CSF tap test in idiopathic normal pressure hydrocephalus: still a necessary prognostic test? - Journal of Neurology, 269(9): 5114-5126, May 2022

Pur DR, Preti, MG, De Ribaupierre A, Van De Ville D, Eagleson R, Mella N, de Ribaupierre S. Mapping of Structure-Function Age-Related Connectivity Changes on Cognition Using Multimodal MRI: A longitudinal study - Frontiers In Aging Neuroscience, 14: 757861, May 2022

Kebiri H, Canales-Rodríguez EJ, Lajous H, de Dumast P, Girard G, Alemán-Gómez Y, Koob M, Jakab A, Bach Cuadra M. Through-plane super-resolution with autoencoders in Diffusion Magnetic Resonance Imaging of the developing human brain - Frontiers in Neurology, 13: 827816, May 2022

Debarre T, Denoyelle Q, Unser M, Fageot J. Sparsest piecewise-linear regression of one-dimensional data - Journal of Computational and Applied Mathematics, 406: 114044, May 2022

Griffa A, Amico E, Liégeois R, Van De Ville D, Preti MG. Brain structure-function coupling provides signatures for task decoding and individual fingerprinting - NeuroImage, 250: 118970, April 2022

Dumast P de, Kebiri H, Payette K, Jakab A, Lajous H, Bach Cuadra M. Synthetic magnetic resonance images for domain adaptation: Application to fetal brain tissue segmentation - 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), 1(5): , March 2022

La Rosa F, Beck ES, Maranzano J, Todea R-A, van Gelderen P, de Zwart JA, Luciano NJ, Duyn JH, Thiran JP, Granziera C, Reich DS, Sati P, Bach Cuadra M. Multiple sclerosis cortical lesion detection with deep learning at ultra‐high‐field MRI - NMR in Biomedicine, 35(8): e4730, March 2022

Helmchen C, Koch PJ, Girard G, Brüggemann N, Machner B, Sprenger A. NPTX1‑related oculomotor apraxia: an intra‑hemispheric disconnection disorder - Journal of Neurology, 269(7): 3931-3936, March 2022

Aziznejad S, Debarre T, Unser M. Sparsest univariate learning models under Lipschitz constraint - IEEE Open Journal of Signal Processing, 3: 140-154, March 2022

Griffa A, Van De Ville D, Preti MG. Structure-function dependencies as informative features for brain decoding and fingerprinting - IEEE Xplore, : 1284-1287, March 2022

Rahmanzadeh R, Weigel M, Lu PJ, Melie-Garcia L, Nguyen TD, Cagol A, La Rosa F, Barakovic M, Lutti A, Wang Y, Bach Cuadra M, Radue EW, Gaetano L, Kappos L, Kuhle J, Magon S, Granziera C. A comparative assessment of myelin-sensitive measures in multiple sclerosis patients and healthy subjects - NeuroImage: Clinical, 36: 103177, August 2022

Goujon A, Aziznejad S, Naderi A, Unser M. Shortest-support multi-spline bases for generalized sampling - Journal of Computational and Applied Mathematics, 395(2021): 113610, October 2021

Van De Ville D, Farouj Y, Preti MG, Liégeois R, Amico E. When makes you unique: Temporality of the human brain fingerprint - Science Advances, 7(42): eabj0751, October 2021

Todea RA, Melie Garcia L, Barakovic M, Siebenborn N, Cagol A, Rahmanzadeh R, Galbusera R, Lu PJ, Weigel M, Ruberte E, Radue EW, Schaedelin S, Benkert P, Yaldizli O, Oechtering J, Sinnecker T, Müller S, Achtnichts L, Vehoff J, Disanto G, Findling O, Chan A, Salmen A, Pot C, Lalive P, Zecca C, Derfuss T, Remonda L, Wagner F, Vargas M, Du Pasquier R, Pravata E, Weber J, Gobbi C, Leppert D, Wuerfel J, Kober T, Marechal B, Corredor-Jerez R, Psychogios M, Lieb J, Kappos L, Bach Cuadra M, Kuhle J, Granziera C. Leman-PV as a clinical decision-support tool to assess MS activity: a multicentric longitudinal study at 1.5T and 3T MRI - ECTRIMS 2021 - Multiple Sclerosis Journal, 27(2_SUPPL): 499, October 2021

La Rosa F, Beck ES, Maranzano J, Thiran JP, Granziera C, Reich DS, Sati P, Bach Cuadra M. Automated detection of cortical lesions with single and multi-contrast 7T MRI - ECTRIMS 2021 - Multiple Sclerosis Journal, 27(2_SUPPL): 458-459, October 2021

La Rosa F, Lu PJ, Rahmanzadeh R, Cagol A, Barakovic M, Thiran JP, Granziera C, Bach Cuadra M. CLaiMS-Net: cortical lesions assessment in multiple sclerosis patients via a convolutional neural network and a single 3T MRI acquisition - ECTRIMS 2021 - Multiple Sclerosis Journal, 27(2_SUPPL): 457-458, October 2021

Müller J, Rahmanzadeh R, Tsagkas C, Barakovic M, Lu PJ, Yaldizli O, Weigel M, Beaumont J, La Rosa F, Bach Cuadra M, Kappos L, Kuhle J, Gambarota G, Granziera C. Cortical lesion detection using FLAWS in multiple sclerosis - ECTRIMS 2021 - Multiple Sclerosis Journal, 27(2_SUPPL): 465, October 2021

Rahmanzadeh R, Weigel M, Lu PJ, Melie-Garcia L, Nguyen TD, La Rosa F, Wang Y, Bach Cuadra M, Radue EW, Gaetano L, Magon S, Kappos L, Kuhle J, Granziera C. An assessment of intra-scanner reproducibility of myelin-sensitive MRI measures - ECTRIMS 2021 - Multiple Sclerosis Journal, 27(2_SUPPL): 430-431, October 2021

Bozorgtabar B, Vray G, Mahapatra D, Thiran JP. SOoD: Self-supervised Out-of-Distribution detection under domain shift for multi-class colorectal cancer tissue types - IEEE/CVF International Conference on Computer Vision (ICCV) Workshops, : 3324-3333, Virtual, October 2021

Kebiri H, Lajous H, Yasser Aleman-Gomez Y, Girard G, Canales Rodriguez E, Tourbier S, Pizzolato M, Ledoux JB, Fornari E, Jakab A, Bach Cuadra M. Quantitative evaluation of enhanced multi-plane clinical fetal diffusion MRI with a crossing-fiber phantom - 12th International Workshop, CDMRI 2021, 13006: 12-22, Strasbourg, France, October 2021

Anklin V, Pati P, Jaume G, Bozorgtabar B, Foncubierta-Rodriguez A, Thiran JP, Sibony M, Gabrani M, Goksel O. Learning whole-slide segmentation from inexact and incomplete labels using tissue graphs - Medical Image Computing and Computer Assisted Intervention – MICCAI 2021 24th International Conference, : 636-646, Strasbourg, France, October 2021

Rafael-Patino J, Girard G, Truffet R, Pizzolato M, Thiran JP, Caruyer E. The microstructural features of the diffusion-simulated connectivity (DiSCo) dataset - 12th International Workshop, CDMRI 2021, : 159-170, Strasbourg, France, September 2021

de Dumast P, Kebiri H, Atat C, Dunet V, Koob M, Bach Cuadra M. Segmentation of the cortical plate in fetal brain MRI with a topological loss - Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis. UNSURE 2021, PIPPI 2021, : , Strasbourg, France, October 2021

Rensonnet G, Rafael-Patino J, Macq B, Thiran JP, Pizzolato M, Girard G. A Signal Peak Separation Index for axisymmetric B-tensor encoding - Computational Diffusion MRI, : 29-42, September 2021

Debarre T, Aziznejad S, Unser M. Continuous-domain formulation of inverse problems for composite sparse-plus-smooth signals - IEEE Open Journal of Signal Processing, 2: 545-558, 2021

Di Noto T, Atat C, Gamito Teiga E, Hegi M, Hottinger A, Bach Cuadra M, Hagmann P, Richiardi J. Diagnostic surveillance of high-grade gliomas: towards automated change detection using radiology report classification - Applications of Machine Learning in Pharma and Healthcare Workshop, MICCAI, : , Strasbourg, France, September 2021

Rafael-Patino J, Girard G, Truffet R, Pizzolato M, Caruyer E, Thiran JP. The diffusion-simulated connectivity (DiSCo) dataset - Data in Brief, 38(2021): 107429, September 2021

Lajous H, Hilbert T, Roy CW, Tourbier S, de Dumast P, Alemán-Gómez Y, Yu T, Kebiri H, Ledoux JB, Hagmann P, Meuli R, Dunet V, Koob M, Stuber M, Kober T, Bach Cuadra M. Simulated Half-Fourier Acquisitions Single-shot Turbo spin Echo (HASTE) of the fetal brain: application to super-resolution reconstruction - Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis. UNSURE 2021, PIPPI 2021, 12959: 157-167, Strasbourg, France, September 2021

Niendorf T, Beenakker J, Langner S, Erb-Eigner K, Bach Cuadra M, Beller E, Millward JM, Niendorf TM, Stachs O. Ophthalmic magnetic resonance imaging: Where are we (heading to)? - Current Eye Research, 46(9): 1251-1270, September 2021

Unser M. A unifying representer theorem for inverse problems and machine learning - Foundations of Computational Mathematics, 21(2021): 941-960, August 2021