La Rosa F, Beck ES, Maranzano J, Thiran JP, Granziera C, Reich DS, Sati P, Bach Cuadra M. Automated detection of cortical lesions with single and multi-contrast 7T MRI - ECTRIMS 2021 - Multiple Sclerosis Journal, 27(2_SUPPL): 458-459, October 2021

La Rosa F, Lu PJ, Rahmanzadeh R, Cagol A, Barakovic M, Thiran JP, Granziera C, Bach Cuadra M. CLaiMS-Net: cortical lesions assessment in multiple sclerosis patients via a convolutional neural network and a single 3T MRI acquisition - ECTRIMS 2021 - Multiple Sclerosis Journal, 27(2_SUPPL): 457-458, October 2021

Müller J, Rahmanzadeh R, Tsagkas C, Barakovic M, Lu PJ, Yaldizli O, Weigel M, Beaumont J, La Rosa F, Bach Cuadra M, Kappos L, Kuhle J, Gambarota G, Granziera C. Cortical lesion detection using FLAWS in multiple sclerosis - ECTRIMS 2021 - Multiple Sclerosis Journal, 27(2_SUPPL): 465, October 2021

Rahmanzadeh R, Weigel M, Lu PJ, Melie-Garcia L, Nguyen TD, La Rosa F, Wang Y, Bach Cuadra M, Radue EW, Gaetano L, Magon S, Kappos L, Kuhle J, Granziera C. An assessment of intra-scanner reproducibility of myelin-sensitive MRI measures - ECTRIMS 2021 - Multiple Sclerosis Journal, 27(2_SUPPL): 430-431, October 2021

Bozorgtabar B, Vray G, Mahapatra D, Thiran JP. SOoD: Self-supervised Out-of-Distribution detection under domain shift for multi-class colorectal cancer tissue types - IEEE/CVF International Conference on Computer Vision (ICCV) Workshops, : 3324-3333, Virtual, October 2021

Falcão MBL, Di Sopra L, Ma L, Bacher M, Yerly J, Speier P, Rutz T, Prša M, Markl M, Stuber M, Roy CW. Pilot tone navigation for respiratory and cardiac motion-resolved free-running 5D flow MRI - Magnetic Resonance in Medicine, 87(2): , October 2021

Battiston F, Amico E, Barrat A, Bianconi G, Ferraz de Arruda G, Franceschiello B, Iacopini I, Kéfi S, Latora V, Moreno Y, Murray MM, Peixoto TP, Vaccarino F, Petri G. The physics of higher-order interactions in complex systems - Nature Physics, 17: 1093-1098, October 2021

Kebiri H, Lajous H, Yasser Aleman-Gomez Y, Girard G, Canales Rodriguez E, Tourbier S, Pizzolato M, Ledoux JB, Fornari E, Jakab A, Bach Cuadra M. Quantitative evaluation of enhanced multi-plane clinical fetal diffusion MRI with a crossing-fiber phantom - 12th International Workshop, CDMRI 2021, 13006: 12-22, Strasbourg, France, October 2021

Anklin V, Pati P, Jaume G, Bozorgtabar B, Foncubierta-Rodriguez A, Thiran JP, Sibony M, Gabrani M, Goksel O. Learning whole-slide segmentation from inexact and incomplete labels using tissue graphs - Medical Image Computing and Computer Assisted Intervention – MICCAI 2021 24th International Conference, : 636-646, Strasbourg, France, October 2021

Rafael-Patino J, Girard G, Truffet R, Pizzolato M, Thiran JP, Caruyer E. The microstructural features of the diffusion-simulated connectivity (DiSCo) dataset - 12th International Workshop, CDMRI 2021, : 159-170, Strasbourg, France, September 2021

Klauser A, Klauser P, Grouiller F, Courvoisier S, Lazeyras F. Whole-brain high-resolution metabolite mapping with 3D compressed-sensing SENSE low-rank 1H FID-MRSI - NMR in Biomedicine, : e4615, October 2021

de Dumast P, Kebiri H, Atat C, Dunet V, Koob M, Bach Cuadra M. Segmentation of the cortical plate in fetal brain MRI with a topological loss - Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis. UNSURE 2021, PIPPI 2021, : , Strasbourg, France, October 2021

Rensonnet G, Rafael-Patino J, Macq B, Thiran JP, Pizzolato M, Girard G. A Signal Peak Separation Index for axisymmetric B-tensor encoding - Computational Diffusion MRI, : 29-42, September 2021

Debarre T, Aziznejad S, Unser M. Continuous-domain formulation of inverse problems for composite sparse-plus-smooth signals - IEEE Open Journal of Signal Processing, 2: 545-558, 2021

Dorniak K, Di Sopra L, Sabisz A, Glinska A, Roy CW, Gorczewski K, Piccini D, Yerly J, Jankowska H, Fijałkowska J, Szurowska E, Stuber M, van Heeswijk RB. Respiratory motion-registered isotropic whole-Heart T2 mapping in patients with acute non-ischemic myocardial injury - Frontiers in Cardiovascular Medicine, 8(712383): , September 2021

Di Noto T, Atat C, Gamito Teiga E, Hegi M, Hottinger A, Bach Cuadra M, Hagmann P, Richiardi J. Diagnostic surveillance of high-grade gliomas: towards automated change detection using radiology report classification - Applications of Machine Learning in Pharma and Healthcare Workshop, MICCAI, : , Strasbourg, France, September 2021

Kathe C, Michoud F, Schönle P, Rowald A, Brun N, Ravier J, Furfaro I, Paggi V, Kim K, Soloukey S, Asboth L, Hutson TH, Jelescu I, Philippides A, Alwahab N, Gandar J, Huber D, De Zeeuw CI, Barraud Q, Huang Q, Lacour SP, Courtine G. Wireless closed-loop optogenetics across the entire dorsoventral spinal cord in mice - Nature Biotechnology, : 1087-0156, September 2021

Rafael-Patino J, Girard G, Truffet R, Pizzolato M, Caruyer E, Thiran JP. The diffusion-simulated connectivity (DiSCo) dataset - Data in Brief, 38(2021): 107429, September 2021

Lajous H, Hilbert T, Roy CW, Tourbier S, de Dumast P, Alemán-Gómez Y, Yu T, Kebiri H, Ledoux JB, Hagmann P, Meuli R, Dunet V, Koob M, Stuber M, Kober T, Bach Cuadra M. Simulated Half-Fourier Acquisitions Single-shot Turbo spin Echo (HASTE) of the fetal brain: application to super-resolution reconstruction - Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis. UNSURE 2021, PIPPI 2021, 12959: 157-167, Strasbourg, France, September 2021

Flatt E, McLin VA, Olivier Braissant O, Pierzchala K, Mastromarino P, Mitrea SO, Sessa D, Gruetter R, Cudalbu C. Probiotics combined with rifaximin influence the neurometabolic changes in a rat model of type C HE - Scientific Reports, 11(1): 17988, September 2021

Da Costa S, Clément J, Gruetter R, Ipek O. Evaluation of the whole auditory pathway using high-resolution and functional MRI at 7T parallel-transmit - PLoS One, 16: e0254378, September 2021

Niendorf T, Beenakker J, Langner S, Erb-Eigner K, Bach Cuadra M, Beller E, Millward JM, Niendorf TM, Stachs O. Ophthalmic magnetic resonance imaging: Where are we (heading to)? - Current Eye Research, 46(9): 1251-1270, September 2021

Regnaud A, Boto J, Klauser A, Lövblad KO, Vargas MI, Lazeyras F. Metabolic changes in the cingulate gyrus, precuneus, and white matter in anorexia nervosa using multivoxel MR spectroscopy - Journal of Neuroimaging, : 1-12, August 2021

Unser M. A unifying representer theorem for inverse problems and machine learning - Foundations of Computational Mathematics, 21(2021): 941-960, August 2021

Schilling KG, Rheault F, Petit L, Hansen CB, Nath V, Yeh FC, Girard G, Barakovic M, Rafael-Patino J, Yu T, Fischi-Gomez E, Pizzolato M, Ocampo-Pineda M, Schiavi S, Canales-Rodríguez EJ, Daducci A, Granziera C, Innocenti G, Thiran JP, Mancini L, Wastling S, Cocozza S, Petracca M, Pontillo G, Mancini M, Vos SB, Vakharia VN, Duncan JS, Melero H, Manzanedo L, Sanz-Morales E, Peña-Melián A, Calamante F, Attyéw A, Cabeen RP, Korobova L, Toga AW, Vijayakumari AA, Parker D, Verma R, Radwan A, Sunaert S, Emsell L, De Luca A, Leemans A, Bajada CJ, Haroon H, Azadbakht H, Chamberland M, Genc S, Tax CMW, Yeh PH, Srikanchana R, Mcknight CD, Yang JYM, Chen J, Kelly CE, Yeh CH, Cochereau J, Maller JJ, Welton T, Almairac F, Seunarine KK, Clark CA, Zhang F, Makris N, Golby A, Rathi Y, O’Donnell LJ, Xia Y, Aydogan DB, Shi Y, Guerreiro Fernandes F, Raemaekers M, Warrington S, Michielse S, Ramírez-Manzanares A, Concha L, Aranda R, Rivera Meraz M, Lerma-Usabiaga G, Roitman L, Fekonja LS, Calarco N, Joseph M, Nakua H, Voineskos AN, Karan P, Grenier G, Haitz Legarreta JH, Adluru N, Nair VA, Prabhakaran V, Alexander AL, Kamagata K, Saito Y, Uchida W, Andica C, Abe M, Bayrak RG, Wheeler-Kingshott CAM, D’Angelo E, Palesi F, Savini G, Rolandi N, Guevara P, Houenou J, López-López N, Mangin JF, Poupon C, Román C, Vázquez A, Maffei C, Arantes M, Andrade JP, Silva SM, Calhoun VD, Caverzasi E, Sac S. Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? - NeuroImage, 243(2021): 118502, August 2021

Askin Incebacak NC, Sui Y, Gui Levy L, Merlini L, Sa de Almeida J, Courvoisier S, Wallace TE, Klauser A, Afacan O, Warfield SK, Hüppi P, Lazeyras F. Super-resolution reconstruction of T2-weighted thick-slice neonatal brain MRI scans - Journal of Neuroimaging, 1: 12, August 2021

Antiochos P, Ge Y, Heydari B, Steel K, Bingham S, Abdullah SM, Mikolich JR, Arai AE, Bandettini WP, Patel AR, Farzaneh-Far A, Heitner JF, Shenoy C, Leung SW, Gonzalez JA, Shah DJ, Raman SV, Ferrari VA, Schulz-Menger J, Stuber M, Simonetti OP, Kwong RY. Prognostic value of stress cardiac magnetic resonance in patients with known coronary artery disease - JACC: Cardiovascular Imaging, 15(1): 60-71, August 2021

Koch PJ, Park CH, Gabriel Girard G, Beanato E, Egger P, Evangelista GG, Lee J, Wessel MJ, Morishita T, Koch G, Thiran JP, Guggisberg AG, Rosso C, Kim YH, Hummel FC. The structural connectome and motor recovery after stroke: predicting natural recovery - Brain, 144(7): 2107-2119, August 2021

Klauser A, Strassera B, Thapaa B, Lazeyras F, Andronesi O. Achieving high-resolution 1H-MRSI of the human brain with compressed-sensing and low-rank reconstruction at 7 Tesla - Journal of Magnetic Resonance, 331(2021): 107048, August 2021

Khawam M, de Dumast P, Deman P, Kebiri H, Yu T, Tourbier S, Lajous H, Hagmann P, Maeder P, Thiran JP, Meuli R, Dunet V, Bach Cuadra M, Koob M. Fetal brain biometric measurements on 3D super-resolution reconstructed T2-weighted MRI: an intra- and inter-observer agreement study - Frontiers in Pediatrics, 9(639746): 651, August 2021

Cudalbu C, Bady P, Lai M, Xin L, Gusyatiner O, Hamou MF, Lepore M, Brouland JP, Daniel RT, Hottinger AF, Hegi ME. Metabolic and transcriptomic profiles of glioblastoma invasion revealed by comparisons between patients and corresponding orthotopic xenografts in mice - Acta Neuropathologica Communications, 9: 133, August 2021

Bréchet L, Michel CM, Schacter DL, Pascual-Leone A. Improving autobiographical memory in Alzheimer’s disease by transcranial alternating current stimulation - ScienceDirect, 40: 64-71, August 2021

Unser M, Aziznejad S. Convex optimization in sums of Banach spaces - Applied and Computational Harmonic Analysis, 56(2022): 1-25, July 2021

Strijbis VIJ, de Bloeme CM, Jansen RW, Kebiri H, Nguyen H-G, de Jong JC, Moll AC, Bach Cuadra M, de Graaf P, Steenwijk MD. Multi-view convolutional neural networks for automated ocular structure and tumor segmentation in retinoblastoma - Scientific Reports, 11: 14590, July 2021

Klauser P, Cropley VL, Baumann PS, Lv J, Steullet P, Dwir D, Alemán-Gómez Y, Bach Cuadra M, Cuenod M, Do KQ, Conus P, Pantelis C, Fornito A, Van Rheenen TE, Zalesky A. White matter alterations between brain network hubs underlie processing speed impairment in patients with schizophrenia - Schizophrenia Bulletin, 2(1): , July 2021

Heerfordt J, Whitehead KK, Bastiaansen JAM, Di Sopra L, Roy CW, Yerly J, Milani B, Fogel MA, Stuber M, Piccini D. Similarity-driven multi-dimensional binning algorithm (SIMBA) for free-running motion-suppressed whole-heart MRA - Magnetic Resonance in Medicine, 86(1): 213–229, July 2021

Payette K, de Dumast P, Kebiri H, Ivan Ezhov I, Paetzold JC, Shit S, Iqbal A, Khan R, Kottke R, Grehten P, Ji H, Lanczi L, Nagy M, Beresova M, Nguyen TD, Natalucci G, Karayannis T, Menze B, Bach Cuadra M, Jakab A. An automatic multi-tissue human fetal brain segmentation benchmark using the Fetal Tissue Annotation Dataset - Nature Scientific Data, 8(1): 167, July 2021

Ma L, Yerly J, Di Sopra L, Piccini D, Lee J, DiCarlo A, Passman R, Greenland P, Kim D, Stuber M, Markl M. Using 5D flow MRI to decode the effects of rhythm on left atrial 3D flow dynamics in patients with atrial fibrillation - Magnetic Resonance in Medicine, 85(6): 3125-3139, June 2021

Flatt E, Lanz B, Pilloud Y, Capozzi A, Hauge Lerche M, Gruetter R, Mishkovsky M. Measuring Glycolytic Activity with Hyperpolarized [2H7, U-13C6] D-Glucose in the Naive Mouse Brain under Different Anesthetic Conditions - Metabolites, 11(7): 413, June 2021

Jaume G, Pati P, Bozorgtabar B, Foncubierta A, Anniciello AM, Feroce F, Rau T, Thiran JP, Gabrani M, Goksel O. Quantifying Explainers of Graph Neural Networks in Computational Pathology - IEEE/CVF Conference on Computer Vision and Pattern Recognition, : 8106-8116, June 2021

Lu P-J, Barakovic M, Weigel M, Rahmanzadeh R, Galbusera R, Schiavi S, Daducci A, La Rosa M, Bach Cuadra M, Sandkühler R, Kuhle J, Kappos L, Cattin P and Granziera C. GAMER-MRI in multiple sclerosis identifies the diffusion-based microstructural measures that are most sensitive to focal damage: A deep-learning-based analysis and clinico-biological validation - Frontiers in Neuroscience, 15: 647535, April 2021

Barakovic M, Girard G, Schiavi S, Romascano D, Descoteaux M, Jones DK, Innocenti G, Thiran JP, Daducci A. Bundle-Specific Axon Diameter Index as a New Contrast to Differentiate White Matter Tracts - Frontiers in Neuroscience, 15: 68, June 2021

Badoual A, Romani L, Unser M. Active subdivision surfaces for the semiautomatic segmentation of biomedical volumes - IEEE Transactions on Image Processing, 30(2021): , June 2021

Bommarito G, Tarun A, Farouj Y, Preti MG, Petracca M, Droby A, El Mendili MM, Inglese M, Van De Ville D. Altered anterior default mode network dynamics in progressive multiple sclerosis - Multiple Sclerosis Journal, 1: 11, June 2021

Simicic D, Rackayova V, Xin L, Tkáč I, Borbath T, Starcuk Z, Starcukova J, Lanz B, Cudalbu C. In vivo macromolecule signals in rat brain 1H-MR spectra at 9.4T: Parametrization, spline baseline estimation, and T2 relaxation times - Magnetic Resonance in Medicine, 00: 1-18, June 2021

Deiber MP, Ammann C, Hasler R, Colin J, Perroud N, Ros T. Electrophysiological correlates of improved executive function following EEG neurofeedback in adult attention deficit hyperactivity disorder - Clinical Neurophysiology, 132(2021): 1937-1946, June 2021

Siffredi V, Preti MG, Obertino S, Leventer RJ, Wood AG, McIlroy A, Anderson V, Spencer-Smith MM, Van De Ville D. Revisiting brain rewiring and plasticity in children born without corpus callosum - Developmental Science, 24(6): e13126, June 2021

Rey G, Bolton TAW, Julian Gaviria J, Piguet C, Preti MG, Favre S, Aubry J-M, Van De Ville D, Vuilleumier P. Dynamics of amygdala connectivity in bipolar disorders: a longitudinal study across mood states - Neuropsychopharmacology, O: 1-9, June 2021

Wenz D, Gruetter R. Dipole-fed rectangular dielectric resonator antennas for magnetic resonance imaging at 7 T: The impact of quasi-transverse electric modes on transmit field distribution - Frontiers in Physics, 9: 675509, June 2021

Maggi P, Kuhle J, Schädelin S, van der Meer F, Weigel M, Galbusera R, Mathias A, Lu P-L, Rahmanzadeh R, Benkert P, La Rosa F, Bach Cuadra M, Sati P, Théaudin M, Pot C, van Pesch V, Leppert D, Stadelmann C, Kappos L, Du Pasquier R, Reich DS, Absinta M, Granziera C. Chronic white matter inflammation and serum neurofilament levels in Multiple Sclerosis - Neurology, 97(6): e543-e553, June 2021

Dwir D, Cabungcal JH, Xin L, Giangreco B, Parietti E, Cleusix M, Jenni R, Klauser P, Conus P, Cuénod M, Steullet P, Do KQ. Timely N-acetyl-cysteine and environmental enrichment rescue oxidative stress-induced parvalbumin interneuron impairments via MMP9/RAGE pathway: A translational approach for early intervention in psychosis - Schizophrenia Bulletin, 47(6): 1782-1794, June 2021

Yoo J, Jin KH, Gupta H, Yerly J, Stuber M, Unser M. Time-dependent deep image prior for dynamic MRI - IEEE Transactions on Medical Imaging, 40(12): 3337 - 3348, May 2021

Caminiti R, Girard G, Battaglia-Mayer A, Borra E, Schito A, Innocenti GM, Luppino G. The complex hodological architecture of the macaque dorsal intraparietal areas as emerging from neural tracers and DW-MRI tractography - eNeuro, 8(4): , May 2021

Nussbaumer C, Bouchardy J, Blanche C, Piccini D, Pavon AG, Monney P, Stuber M, SchwitterJ, Rutz T. 2D cine vs. 3D self‑navigated free‑breathing high‑resolution whole heart cardiovascular magnetic resonance for aortic root measurements in congenital heart disease - Journal of Cardiovascular Magnetic Resonance, 23(2021): 65, May 2021

Ribaldi F, Chicherio C, Altomare D, Martins M, Tomczyk S, Jelescu I, Maturana E, Scheffler M, Haller S, Lövblad KO, Michela Pievani M, Garibotto V, Kliegel M, Frisoni GB. Brain connectivity and metacognition in persons with subjective cognitive decline (COSCODE): rationale and study design - Alzheimer's Research & Therapy, 13: 105, May 2021