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Viñals R., Thiran J.-P.. A KL Divergence-Based Loss for In Vivo Ultrafast Ultrasound Image Enhancement with Deep Learning - Journal of Imaging, 9(12): 256, 23 November 2023
Ravano V., Piredda G.F., Krasensky J., Andelova M., Uher T., Srpova B., Kubala Havrdova E., Vodehnalova K., Horakova D., Nytrova P., Disselhorst J. A., Hilbert T., Maréchal B., Thiran J.-P., Kober T., Richiardi J., Vaneckova M.. Tract-wise microstructural analysis informs on current and future disability in early multiple sclerosis - Journal of Neurology, 271(2): 631-641, 11 October 2023
Chowdhury R., Wan J., Gardier R., Rafael-Patino J., Thiran J.-P., Gibou F., Mukherjee A.. Molecular Imaging with Aquaporin-Based Reporter Genes: Quantitative Considerations from Monte Carlo Diffusion Simulations - ACS Synthetic Biology, 12(10): 3041–3049, 4 October 2023
Ravano V., Sommer S., Piredda G. F., Krasensky J., Andelova M., Kudrna M., Uher T., Disselhorst J., Marechal B., Thiran J.-Ph., Hilbert T., Richiardi J., Vaneckova M., Kober T.. Perilesional tissue exhibits different T1 gradients depending on multiple sclerosis subtypes - 9th Joint ECTRIMS-ACTRIMS meeting, : , Milan, 13 October 2023
Leserri S., Segura-Amil A., Nowacki A., Debove I., Petermann K., Schäppi L., Preti M. G., Van De Ville D., Pollo C., Walther S., Nguyen T. A. K.. Linking connectivity of deep brain stimulation of nucleus accumbens area with clinical depression improvements: a retrospective longitudinal case series - European Archives of Psychiatry and Clinical Neuroscience, 274(3): 685–696, 05 September 2023
Viñals R., Beuret S., Thiran J.-P.. Quality Enhancement of Ultrafast Ultrasound Images with Deep Networks and Transfer Learning - 2023 IEEE International Ultrasonics Symposium (IUS), : , Montreal, September 2023
Heriard-Dubreuil B., Besson A., Cohen-Bacrie C., Thiran J. -P.. Interpolation-Based Regularization for Speed of Sound Estimation in Layered Media - 2023 IEEE International Ultrasonics Symposium (IUS), : , Montreal, September 2023
Heriard-Dubreuil B., Besson A., Cohen-Bacrie C., Thiran J.-P.. An Angular Framework for the Separation of Single and Multiple Scattering - 2023 IEEE International Ultrasonics Symposium (IUS), : , Montreal, September 2023
Barakovic M., Pizzolato M., Tax C. M. W., Rudrapatna U., Magon S., Dyrby T. B., Granziera C., Thiran J.-P., Jones D. K., Canales-Rodríguez E.J.. Estimating axon radius using diffusion-relaxation MRI: calibrating a surface-based relaxation model with histology - Frontiers in Neuroscience, 17: , 11 August 2023
Villarreal-Haro J. L., Gardier R., Canales-Rodríguez E .J., Fischi-Gomez E., Girard G., Thiran J.-P., Rafael-Patiño J.. CACTUS: a computational framework for generating realistic white matter microstructure substrates - Frontiers in Neuroinformatics, 17: , 01 August 2023
Siffredi V., Liverani M. C., Borradori-Tolsa C., Hà-Vinh Leuchter R., Thiran J.-P., Hüppi P. S., Fischi-Gómez E.. Cortical alterations after very preterm birth and the association with socio-emotional abilities from childhood to early adolescence - Cerebral Cortex, 33(14): 9117-9129, 15 July 2023
Windel F., Gardier R., Fourchard G., Viñals R., Bavelier D., Padberg F. J., Rancans E., Bonne O., Nahum M., Thiran J.-P., Morishita T., Hummel F. C.. Computer vision-based algorithm to sUppoRt coRrect electrode placemeNT (CURRENT) for home-based electric non-invasive brain stimulation - Clinical Neurophysiology, 153: 57-67, 14 July 2023
Beuret S., Thiran J.-P.. Windowed Radon Transform and Tensor Rank-1 Decomposition for Adaptive Beamforming in Ultrafast Ultrasound - IEEE Transactions on Medical Imaging, 43(1): 135-148, 14 July 2023
Girard G., Rafael-Patiño J., Truffet R., Aydogan D. B., Adluru N., Nair V. A., Prabhakaran V., Bendlin B. B., Alexander A. L., Bosticardo S., Gabusi I., Ocampo-Pineda M., Battocchio M., Piskorova Z., Bontempi P., Schiavi S., Daducci A., Stafiej A., Ciupek D., Bogusz F., Pieciak T., Frigo M., Sedlar S., Deslauriers-Gauthier S., Kojčić I., Zucchelli M., Laghrissi H., Ji Y., Deriche R., Schilling K. G., Landman B. A., Cacciola A., Basile G. A., Bertino S., Newlin N., Kanakaraj P., Rheault F., Filipiak P., Shepherd T. M., Lin Y.-C., Placantonakis D. G., Boada F. E., Baete S. H., Hernández-Gutiérrez E., Ramírez-Manzanares A., Coronado-Leija R., Stack-Sánchez P., Concha L., Descoteaux M., Mansour S., Seguin C., Zalesky A., Marshall K., Canales-Rodríguez E. J., Wu Y., Ahmad S., Yap P.-T., Théberge A., Gagnon F., Massi F., Fischi-Gomez E., Gardier R., Villarreal Haro J. L., Pizzolato M., Caruyer E., Thiran J.-P.. Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge - NeuroImage, 277: 120231, 16 June 2023
Liverani MC, Borradori-Tolda C, Ha-Vinh Leuchter R, Thiran JP, Huppi PS, Fischi-Gomez E. Cortical alterations after very preterm birth and the association with socio-emotional abilities from childhood to early adolescence - Cerebral Cortex, : , June 2023
Gardier R., Villarreal Haro J. L., Canales‐Rodríguez E. J., Jelescu I. O.,Girard G., Rafael‐Patiño J., Thiran J.-P.. Cellular Exchange Imaging (CEXI): Evaluation of a diffusion model including water exchange in cells using numerical phantoms of permeable spheres - Magnetic Resonance in Medicine, 90(4): 1625-1640, 06 June 2023
Bolton TA, Van De Ville D, Amico E, Preti MG, Liégeois R. The arrow-of-time in neuroimaging time series identifies causal triggers of brain function - Human Brain Mapping, : , May 2023
Madrona A., Otálora S., Fischi-Gomez E., Ravano V., Maréchal B., Thiran J.-P., Kober T., Wiest R., McKinley R., Richiardi J., Rafael-Patiño J.. Federated Learning on Heterogeneous Diffusion-Weighted Imaging Data for Acute Stroke Infarct Segmentation - 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), : , Cartagena, April 2023
Gardier R, Villarreal Haro JL, Canales-Rodriguez EJ, Jelescu IO, Girard G, Rafael-Patino J, Thiran JP. Cellular EXchange Imaging (CEXI): Evaluation of a diffusion model including water exchange in cells using numerical phantoms of permeable spheres - arXiv:2303.16112 [eess.SP], : , April 2023
Piredda G. F., Caneschi S., Hilbert T., Bonanno G., Joseph A., Egger K., Peter J., Klöppel S., Jehli E., Grieder M., Slotboom J., Seiffge D., Goeldlin M., Hoepner R., Willems T., Vulliemoz S., Seeck M., Venkategowda P. B., Corredor Jerez R. A., Maréchal B., Thiran J.-P., Wiest R., Kober T., Radojewski P.. Submillimeter T1 atlas for subject-specific abnormality detection at 7T - Magnetic Resonance in Medicine, 89(4): 1601-1616, April 2023
Hériard-Dubreuil B., Besson A., Wintzenrieth F., Cohen-Bacrie C., Thiran J.-P.. Refraction-Based Speed of Sound Estimation in Layered Media: An Angular Approach - IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 70(6): 486 - 497, 24 March 2023
Viñals R., Jonnalagedda M., Petignat P., Thiran J.-P., Vassilakos P.. Artificial Intelligence-Based Cervical Cancer Screening on Images Taken during Visual Inspection with Acetic Acid: A Systematic Review - Diagnostics, 13(5): 836, 22 February 2023
Windel F., Gardier R.M., Fourchard G., Viñals Terres R., D. Bavelier, Padberg F., Rancans E., Bonne O., Nahum M., Thiran J.-P., Morishita T., Hummel F. C.. Computer vision based algorithm to support correct electrode placement for home-based non-invasive electric brain stimulation - Brain Stimulation: Basic, Translational, and Clinical Research in Neuromodulation, 16(1): 243, January 2023
del Aguila Pla P, Boquet-Pujadas A, Jalden J. Convex Quantization Preserves Logconcavity - IEEE Signal Processing Letters, 29: 2697–2701, December 2022
Bulcke CV, Wynen M, Detobel J, La Rosa F, Absinta M, Dricot L, Macq B, Bach Cuadra M, Maggi P. BMAT: An open-source BIDS managing and analysis tool - Neuroimage: Clinical, 36: 2213-1582, October 2022
Dechantsreiter E, Padberg F, Morash A, Kumpf U, Nguyen A, Menestrina Z, Windel F, Burkhardt G, Goerigk S, Morishita T, Soldini A, Ahissar S, Cohen T, Pasqualotto A, Rubene L, Konosonoka L, Keeser D, Zill P, Assi R, Gardier R, Viñals R, Thiran JP, Segman R, Benjamini Y, Bonne O, Hummel FC, Bavelier D, Rancans E, Nahum M. Examining the synergistic effects of a cognitive control video game and a home-based, self-administered non-invasive brain stimulation on alleviating depression: the DiSCoVeR trial protocol - European Archives of Psychiatry and Clinical Neuroscience, 273(1): 85-98, October 2022
Fleury L, Koch PJ, Wessel MJ, Bonvin C, San Millan D, Constantin C, Vuadens P, Adolphsen J, Cadic Melchior A, Brügger J, Beanato E, Ceroni M, Menoud P, De Leon Rodriguez D, Zufferey V, Meyer NH, Egge P, Harquel S, Popa T, Estelle Raffin E, Girard G, Thiran JP, Vaney C, Alvarez V, Turlan JL, Mühl A, Léger B, Morishita T, Micera S, Blanke O, Van De Ville D, Hummel FC. Toward individualized medicine in stroke—The TiMeS project: Protocol of longitudinal, multi-modal, multi-domain study in stroke - Frontiers in Neurology, 13: 939640, September 2022
La Rosa F, Wynen M, Al-Louzi O, Beck ES, Huelnhagen T, Maggi P, Thiran JP, Kober T, Shinohara RT, Sati P, Reich DS, Granziera C, Absinta M, Bach Cuadra M. Cortical lesions, central vein sign, and paramagnetic rim lesions in multiple sclerosis: Emerging machine learning techniques and future avenues - NeuroImage: Clinical, 36: 103205, September 2022
Taymourtash A, Kebiri H, Schwartz E, Nenning KH, Tourbier S, Kasprian G, Prayer D, Bach Cuadra M, Langs G. Spatio-temporal motion correction and iterative reconstruction of in-utero fetal fMRI - Medical Image Computing and Computer Assisted Intervention – MICCAI 2022, 13436: 603-612, September 2022
Rahmanzadeh R, Galbusera R, Lu PJ, Bahn E, Weigel M, Barakovic M, Franz J, Nguyen TD, Spincemaille P, Schiavi S, Daducci A, La Rosa F, Absinta M, Sati P, Bach Cuadra M, Radue EW, Leppert D, Kuhle J, Kappos L, Brück W, Reich DS, Stadelmann C, Wang Y, Granziera C. A new advanced MRI biomarker for remyelinated lesions in multiple sclerosis - Annals of Neurology, 92: 486-502, September 2022
D. Tomar, B. Bozorgtabar, M. Lortkipanidze, G. Vray, M.S. Rad, J.-Ph. Thiran. Self-Supervised Generative Style Transfer for One-Shot Medical Image Segmentation - Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, : 1998-2008, July 2022
Yu T, Hilbert T, Piredda GF, Joseph A, Bonanno G, Zenkhri S, Omoumi P, Bach Cuadra M, Canales-Rodriguez EJ, Kober T, Thiran JP. Validation and generalizability of self-supervised image reconstruction methods for undersampled MRI - Journal of Machine Learning for Biomedical Imaging, 22: 1-31, September 2022
Alemán-Gómez Y, Baumgartner T, Klauser P, Cleusix M, Jenni R, Hagmann P, Conus P, Do KQ, Bach Cuadra M, Baumann PS, Steullet P. Multimodal magnetic resonance imaging depicts widespread and subregion specific anomalies in the thalamus of early-psychosis and chronic schizophrenia patients - Schizophrenia Bulletin, 49(1): 196–207, September 2022
Müller J, La Rosa F, Beaumont J, Tsagkas C, Rahmanzadeh R, Weigel M, Bach Cuadra M, Gambarota G, Granziera C. Fluid and White Matter Suppression: New Sensitive 3 T Magnetic Resonance Imaging Contrasts for Cortical Lesion Detection in Multiple Sclerosis - Investigative Radiology, 1;57(9): 592-600, September 2022
Griffa A, Preti M G. Brain structure-function coupling is unique to individuals across multiple frequency bands: a graph signal processing study - 30th European Signal Processing Conference (EUSIPCO), : , Belgrade, Serbia, August 2022
Aleman-Gómez Y, Griffa A, Houde JC, Najdenovska E, Magon S, Bach Cuadra M, Descoteaux M, Hagmann P. A multi-scale probabilistic atlas of the human connectome - Scientific Data, 516: , August 2022
Omidvarnia A, Liégeois R, Amico E, Preti MG, Zalesky A, Van De Ville D. On the Spatial Distribution of Temporal Complexity in Resting State and Task Functional MRI - Entropy, 24: 1148, August 2022
Di Noto T, Marie G, Tourbier S, Alemán-Gómez Y, Esteban O, Saliou G, Bach Cuadra M, Hagmann P, Richiardi J. Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and anatomical knowledge - Neuroinformatics, 21(1): 21-34, August 2022
Maffei C, Girard G, Schilling KG, Baran Aydogan D, Adluru N, Zhylka A, Wu Y, Mancini M, Hamamci A, Sarica A, Teillac A, Baete SH, Karimi D, Yeh FC, Yildiz ME, Gholipour A, Bihan-Poudec Y, Hiba B, Quattrone A, Quattrone A, Boshkovski T, Stikov N, Yap PT, de Luca A, Pluim J, Leemans A, Prabhakaran V, Bendlin BB, Alexander AL, Landman BA, Canales-Rodríguez EJ, Barakovic M, Rafael-Patino J, Yu T, Rensonnet G, Schiavi S, Daducci A, Pizzolato M, Fischi-Gomez E, Thiran JP, Dai G, Grisot G, Lazovski N, Puch S, Ramos M, Rodrigues P, Prčkovska V, Jones R, Lehman J, Haber SN, Yendiki A. Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI - NeuroImage, 257: 119327, August 2022
Koch PJ, Girard G, Brügger J, Cadic-Melchior AG, Beanato E, Park CH, Morishita T, Wessel MJ, Pizzolato M, Canales-Rodríguez EJ, Fischi-Gomez E, Schiavi S, Daducci A, Piredda GF, Hilbert T, Kober T, Thiran JP, Hummel FC. Evaluating reproducibility and subject-specificity of microstructure-informed connectivity - NeuroImage, 258: 119356, July 2022
Fischi-Gomez E, Girard G, Koch PJ, Yu T, Pizzolato M, Brügger J, Piredda GF, Hilbert T, Cadic-Melchior AG, Beanato E, Park C-H, Morishita T, Wessel MJ, Schiavi S, Daducci A, Kober T, Canales-Rodríguez EJ, Hummel FC, Thiran JP. Variability and reproducibility of multi-echo T2 relaxometry: Insights from multi-site, multi-session and multi-subject MRI acquisitions - Frontiers in Radiology, 2: 930666, July 2022
Abbet Ch, Studer L, Fischer A, Dawson H, Zlobec I, Bozorgtabar B, Thiran JP. Self-rule to multi-adapt: Generalized multi-source feature learning using unsupervised domain adaptation for colorectal cancer tissue detection - Medical Image Analysis, 79: 102473, July 2022
Tourbier S, Rue-Queralt J, Glomb K, Aleman-Gomez Y, Mullier E, Griffa A, Schöttner M, Wirsich J, Tuncel MA, Jancovic J, Bach Cuadra M, Hagmann P. Connectome mapper 3: A flexible and open-source pipeline software for multiscale multimodal human connectome mapping - Journal of Open Source Software, 7(74): 4248, June 2022
Bortolin K, Delavari F, Preti MG, Sandini C, Mancini V, Mullier E, Van De Ville D, Eliez S. Neural substrates of psychosis revealed by altered dependencies between brain activity and white-matter architecture in individuals with 22q11 deletion syndrome - NeuroImage: Clinical, 35: 103075, June 2022
Lajous H, Roy CW, Hilbert T, de Dumast P, Tourbier S, Alemán-Gómez Y, Yerly J, Yu T, Kebiri H, Payette K, Ledoux JB, Meuli R, Hagmann P, Jakab A, Dunet V, Koob M, Kober T, Stuber M, Bach Cuadra M. A fetal brain Magnetic Resonance acquisition numerical phantom (FaBiAN) - Scientific Reports, 12: 8682, May 2022
del Aguila Pla P, Unser M. Bona fide Riesz projections for density estimation - 2022 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), : 5613-5616, Singapore, May 2022
Griffa A, Bommarito G, Assal F, Preti MG, Goldstein R, Armand S, Herrmann FR, Van De Ville D, Allali G. CSF tap test in idiopathic normal pressure hydrocephalus: still a necessary prognostic test? - Journal of Neurology, 269(9): 5114-5126, May 2022
Pur DR, Preti, MG, De Ribaupierre A, Van De Ville D, Eagleson R, Mella N, de Ribaupierre S. Mapping of Structure-Function Age-Related Connectivity Changes on Cognition Using Multimodal MRI: A longitudinal study - Frontiers In Aging Neuroscience, 14: 757861, May 2022
Kebiri H, Canales-Rodríguez EJ, Lajous H, de Dumast P, Girard G, Alemán-Gómez Y, Koob M, Jakab A, Bach Cuadra M. Through-plane super-resolution with autoencoders in Diffusion Magnetic Resonance Imaging of the developing human brain - Frontiers in Neurology, 13: 827816, May 2022
Debarre T, Denoyelle Q, Unser M, Fageot J. Sparsest piecewise-linear regression of one-dimensional data - Journal of Computational and Applied Mathematics, 406: 114044, May 2022
Griffa A, Amico E, Liégeois R, Van De Ville D, Preti MG. Brain structure-function coupling provides signatures for task decoding and individual fingerprinting - NeuroImage, 250: 118970, April 2022
Dumast P de, Kebiri H, Payette K, Jakab A, Lajous H, Bach Cuadra M. Synthetic magnetic resonance images for domain adaptation: Application to fetal brain tissue segmentation - 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), 1(5): , March 2022
La Rosa F, Beck ES, Maranzano J, Todea R-A, van Gelderen P, de Zwart JA, Luciano NJ, Duyn JH, Thiran JP, Granziera C, Reich DS, Sati P, Bach Cuadra M. Multiple sclerosis cortical lesion detection with deep learning at ultra‐high‐field MRI - NMR in Biomedicine, 35(8): e4730, March 2022
Helmchen C, Koch PJ, Girard G, Brüggemann N, Machner B, Sprenger A. NPTX1‑related oculomotor apraxia: an intra‑hemispheric disconnection disorder - Journal of Neurology, 269(7): 3931-3936, March 2022
Aziznejad S, Debarre T, Unser M. Sparsest univariate learning models under Lipschitz constraint - IEEE Open Journal of Signal Processing, 3: 140-154, March 2022