Publications
Santarnecchi E1, Sicilia I, Richiardi J, Vatti G, Polizzotto NR, Marino D, Rocchi R, Van De Ville D, Rossi A.. Altered cortical and subcortical local coherence in obstructive sleep apnoea: a functional magnetic resonance imaging study - Journal of Sleep Research, 22(3): 337-47, June 2013
Richiardi J, Achard S, Bunke H, Van De Ville D. Machine Learning with Brain Graphs: Predictive Modeling Approaches for Functional Imaging in Systems Neuroscience - IEEE Signal Processing Magazine, 30(3): 58 - 70, April 2013
Pignat JM, Koval O, Van De Ville D, Voloshynovskiy S, Michel C, Pun T. The impact of denoising on independent component analysis of functional magnetic resonance imaging data - Journal of Neuroscience Methods, 213(1): 105-22, February 2013
Ottet MC, Schaer M, Cammoun L, Schneider M, Debbané M, Thiran JP, Eliez S. Reduced Fronto-Temporal and Limbic Connectivity in the 22q11.2 Deletion Syndrome: Vulnerability Markers for Developing Schizophrenia? - PLOS One, 8(3): e58429, March 2013
Ottet MC, Schaer M, Debbane M, Cammoun L, Thiran JP, Eliez S. Graph theory reveals dysconnected hubs in 22q11DS and altered nodal efficiency in patients with hallucinations - Frontiers in Human Neuroscience, 7: 402, September 2013
Nilchian M, Vonesch C, Modregger P, Stampanoni M, Unser M. Fast iterative reconstruction of differential phase contrast X-ray tomograms - Optics Express, 21(5): 5511-5528, December 2013
Nilchian M, Vonesch C, Lefkimmiatis S, Modregger P, Stampanoni M, Unser M. Constrained regularized reconstruction of X-ray-DPCI tomograms with weighted-norm - Optics Express, 21(26): 32340-32348, December 2013
McEwen JD, Vandergheynst P, Wiaux Y. On the computation of directional scale-discretized wavelet transforms on the sphere - Wavelets and Sparsity XV, : , San Diego, CA, USA, August 2013
McEwen J, Puy G, Thiran J, Vandergheynst P, Van De Ville D, Wiaux Y. Sparse image reconstruction on the sphere: implications of a new sampling theorem - IEEE Transactions on Image Processing, 22(6): 2275-85, April 2013
Leonardi N, Van De Ville D. Tight Wavelet Frames on Multislice Graphs - IEEE Transactions on Signal Processing, 61(13): 3357 - 3367, April 2013
Leonardi N, Richiardi J, Gschwind M, Simioni S, Annoni JM, Schluep M, Vuilleumier P, Van De Ville D. Principal components of functional connectivity: A new approach to study dynamic brain connectivity during rest - NeuroImage, 83: 937-50, December 2013
Leistedt B, McEwen JD, Vandergheynst P, Wiaux Y. S2LET: A code to perform fast wavelet analysis on the sphere - Astronomy & Astrophysics, 558: A128, September 2013
Lascano AM, Lemkaddem A, Granziera C, Korff CM, Boex C, Jenny B, Schmitt-Mechelke T, Thiran JP, Garibotto V, Vargas MI, Schaller K, Seeck M, Vulliemoz S. Tracking the source of cerebellar epilepsy: Hemifacial seizures associated with cerebellar cortical dysplasia - Epilepsy Research, 105(1-2): 245-9, July 2013
Koush Y, Rosa MJ, Robineau F, Heinen K, W Rieger S, Weiskopf N, Vuilleumier P, Van De Ville D, Scharnowski F. Connectivity-based neurofeedback: Dynamic causal modeling for real-time fMRI - NeuroImage, 81: 422-430, November 2013
Khalid Z, Kennedy RA, Durrani S, Sadeghi P, Wiaux Y, McEwen JD. Fast Directional Spatially Localized Spherical Harmonic Transform - IEEE Transactions on Signal Processing, 61(9): , July 2012
Kasten J, Lazeyras F, Van De Ville D. Data-Driven MRSI Spectral Localization Via Low-Rank Component Analysis - IEEE Transactions on Medical Imaging, 32(10): 1853-63, October 2013
Karahanoğlu FI, Caballero-Gaudes C, Lazeyras F, Van De Ville D. Total activation: fMRI deconvolution through spatio-temporal regularization - NeuroImage, 73: 121-34, June 2013
Haller S, Kopel R, Jhooti P, Haas T, Scharnowski F, Lovblad K-O, Scheffler K, Van de Ville D. Dynamic reconfiguration of human brain functional networks through neurofeedback - NeuroImage, 81: 243-252, November 2013
Granziera C, Romascano D, Daducci A, Roche A, Vincent M, Krueger G, Hadjikhani N. Migraineurs without aura show microstructural abnormalities in the cerebellum and frontal lobe - The Cerebellum, 12(6): 812-8, December 2013
Gorthi S, Bach Cuadra M, Tercier PA, Allal AS, Thiran JP. Weighted Shape-Based Averaging With Neighborhood Prior Model for Multiple Atlas Fusion-Based Medical Image Segmentation - IEEE Signal Processing Letters, 20(11): 1034 - 1037, August 2013
Gigandet X, Griffa A, Kober T, Daducci A, Gilbert G, Connelly A, Hagmann P, Meuli R, Thiran JP, Krueger G. A Connectome-Based Comparison of Diffusion MRI Schemes - PLOS One, 8(9): e75061, September 2013
Foncubierta–Rodríguez A, Vargas A, Platon A, Poletti PA, Müller H, Depeursinge A. Retrieval of 4D Dual Energy CT for Pulmonary Embolism Diagnosis - Medical Content-Based Retrieval for Clinical Decision Support, : 45-55, October 2012
Doğan Z, Jovanovic I, Blu T, Van De Ville D. Application of a new sensing principle for photoacoustic imaging of point absorbers - Proceedings of SPIE, : 85813Z, March 2013
Depeursinge A, Foncubierta A, Muller H, Van de Ville D. Rotation-covariant visual concept detection using steerable Riesz wavelets and bags of visual words - SPIE Wavelets and Sparsity XV, : , San Diego, CA, USA, August 2013
Carrillo RE, McEwen JD, Van de Ville D, Thiran JP, Wiaux Y. Sparsity Averaging for Compressive Imaging - IEEE Signal Processing Letters, 20(6): 591 - 594, April 2013
Caballero Gaudes C, Petridou N, Francis ST, Dryden IL, Gowland PA. Paradigm free mapping with sparse regression automatically detects single-trial functional magnetic resonance imaging blood oxygenation level dependent responses - Human Brain Mapping, 34(3): 501-18, March 2013
Bostan E, Kamilov US, Nilchian M, Unser M. Sparse Stochastic Processes and Discretization of Linear Inverse Problems - IEEE Transactions on Image Processing, 22(7): 2699-710, October 2012
Binzoni T, Tchernin D, Hyacinthe JN, Van de Ville D, Richiardi J. Pulsatile blood flow in human bone assessed by laser-Doppler flowmetry and the interpretation of photoplethysmographic signals - Physiological Measurement, 34(3): N25-40, March 2013
Van De Ville D, Jhooti P, Haas T, Kopel R, Lovblad KO, Scheffler K, Haller S. Recovery of the default mode network after demanding neurofeedback training occurs in spatio-temporally segregated subnetworks - NeuroImage, 63(4): 1775-81, December 2012
Thevenaz P, Sage D, Unser M. Bi-exponential edge-preserving smoother - IEEE Transactions on Image Processing, 21(9): 3924-36, September 2012
Seelamantula CS, Pavillon N, Depeursinge C, Unser M. Local demodulation of holograms using the Riesz transform with application to microscopy - Journal Of The Optical Society Of America A-Optics Image Science And Vision, 29(10): 2118-29, October 2012
Scharnowski F, Hutton C, Josephs O, Weiskopf N, Rees G. Improving Visual Perception through Neurofeedback - The Journal of Neuroscience, 32(49): 17830–17841, December 2012
Schaer M, Bach Cuadra M, Schmansky N, Fischl B, Thiran JP, Eliez S. How to measure cortical folding from MR images: a step-by-step tutorial to compute local gyrification index - Journal of Visualized Experiments, (59): e3417, January 2012
Rüegsegger MB, Bach Cuadra M, Pica A, Amstutz CA, Rudolph T, Aebersold D, Kowal JH. StatisticalModeling of the Eye for Multimodal Treatment Planning for External Beam Radiation Therapy of Intraocular Tumors - International Journal of Radiation Oncology Biology Physics, 84(4): e541-7, November 2012
Richiardi J, Gschwind M, Simioni S, Annoni JM, Greco B, Hagmann P, Schluep M, Vuilleumier P, Van De Ville D. Classifying minimally disabled multiple sclerosis patients from resting state functional connectivity - NeuroImage, 62(3): 2021-33, September 2012
Reymond P, Vardoulis O, Stergiopulos N. Generic and patient-specific models of the arterial tree - Journal of Clinical Monitoring and Computing, 26(5): 375-82, October 2012
Puy G, Vandergheynst P, Gribonval R, Wiaux Y. Universal and efficient compressed sensing by spread spectrum and application to realistic Fourier imaging techniques - EURASIP Journal on Advances in Signal Processing, 6: 1-13, 2012
Scheffler K, Loktyushin A, Bause J, Aghaeifar A, Steffen T, Schölkopf B. Spread spectrum magnetic resonance imaging - Magnetic Resonance in Medicine, 82(3): 877-885, September 2019
Lemkaddem A, Daducci A, Vulliemoz S, O'Brien K, Lazeyras F, Hauf M, Wiest R, Meuli R, Seeck M, Krueger G, Thiran JP. A multi-center study: Intra-scan and inter-scan variability of diffusion spectrum imaging - NeuroImage, 62(1): 87-94, August 2012
Gui L, Lisowski R, Faundez T, Huppi PS, Lazeyras F, Kocher M. Morphology-driven automatic segmentation of MR images of the neonatal brain - Medical Image Analysis, 16(8): 1565-79, December 2012
Granziera C, Daducci A, Meskaldji DE, Roche A, Maeder P, Michel P, Hadjikhani N, Sorensen AG, Frackowiak RS, Thiran JP, Meuli R, Krueger G. A new early and automated MRI-based predictor of motor improvement after stroke - Neurology, 79(1): 39-46, July 2012
Entezari A, Nilchian M, Unser M. A Box Spline Calculus for the Discretization of Computed Tomography Reconstruction Problems - IEEE Transactions on Medical Imaging, 31(8): 1532 - 1541, March 2012
Depeursinge A, Van de Ville D, Platon A, Geissbuhler A, Poletti PA, Muller H. Near-Affine-Invariant Texture Learning for Lung Tissue Analysis Using Isotropic Wavelet Frames - IEEE Transactions on Information Technology in Biomedicine, 16(4): 665-75, July 2012
Delattre BM1, Van De Ville D, Braunersreuther V, Pellieux C, Hyacinthe JN, Lerch R, Mach F, Vallée JP. High time-resolved cardiac functional imaging using temporal regularization for small animal on a clinical 3T scanner - IEEE Transactions on Biomedical Engineering, 59(4): 929-35, April 2012
Daducci A, Gerhard S, Griffa A, Lemkaddem A, Cammoun L, Gigandet X, Meuli R, Hagmann P, Thiran JP. The connectome mapper: an open-source processing pipeline to map connectomes with MRI - PLOS One, 7(12): e48121, December 2012
Chenouard N, Unser M. 3D Steerable Wavelets in Practice - IEEE Transactions on Image Processing, 21(11): 4522 - 4533, June 2012
Carrillo RE, McEwen JD, Wiaux Y. Sparsity Averaging Reweighted Analysis (SARA): a novel algorithm for radio-interferometric imaging - Monthly Notices of the Royal Astronomical Society, 426: 1223-1234, July 2012
Cammoun L, Gigandet X, Meskaldji D, Thiran JP, Sporns O, Do KQ, Maeder P, Meuli R, Hagmann P. Mapping the human connectome at multiple scales with diffusion spectrum MRI - Journal of Neuroscience Methods, 203(2): 386-97, January 2012
Binzoni T, Tchernin D, Richiardi J, Van De Ville D, Hyacinthe JN. Haemodynamic responses to temperature changes of human skeletal muscle studied by laser-Doppler flowmetry - Physiological Measurement, 33(7): 1181-97, July 2012
Van De Ville D, Kocher M. Nonlocal means with dimensionality reduction and SURE-based parameter selection - IEEE Transactions on Image Processing, 20(9): 2683 - 2690, October 2011
Unser M, Chenouard N, Van De Ville D. Steerable Pyramids and Tight Wavelet Frames in L(2)(R(d)) - IEEE Transactions on Image Processing, 20(10): 2705-21, October 2011
Seelamantula CS, Pavillon N, Depeursinge C, Unser M. Exact complex-wave reconstruction in digital holography - Journal of the Optical Society of America a-Optics Image Science and Vision, 28(6): 983-992, June 2011
Roche A, Ribes D, Bach-Cuadra M, Kruger G. On the convergence of EM-like algorithms for image segmentation using Markov random fields - Medical Image Analysis, 15(6): 830-9, December 2011
Richiardi J, Eryilmaz H, Schwartz S, Vuilleumier P, Van de Ville D. Decoding brain states from fMRI connectivity graphs - NeuroImage, 56(2): 616-26, May 2011
Puy G, Vandergheynst P, Wiaux Y. On Variable Density Compressive Sampling - IEEE Signal Processing Letters, 18(10): 595 - 598, August 2011