Publications
Jorge J, Gretsch F, Najdenovska E, Tuleasca C, Levivier M, Maeder P, Gallichan D, Marques JP, Bach Cuadra M. Improved susceptibility-weighted imaging for high contrast and resolution thalamic nuclei mapping at 7T - Magnetic Resonance in Medicine, 84(3): 1218-1234, February 2020
Tuleasca C, Régis J, Najdenovska E, Witjas T, Girard N, Thiran JP, Bach Cuadra M, Levivier M, Van De Ville D. Letter to the Editor. Resting-state functional MRI for functional neurosurgery: seeing the light? - Journal of Neurosurgery, : 1-2, May 2019
Tuleasca C, Bolton TAW, Régis J, Najdenovska E, Witjas T, Girard N, Delaire F, Vincent M, Faouzi M, Thiran JP, Bach Cuadra M, Levivier M, Van De Ville D. Normalization of aberrant pretherapeutic dynamic functional connectivity of extrastriate visual system in patients who underwent thalamotomy with stereotactic radiosurgery for essential tremor: a resting-state functional MRI study - Journal of Neurosurgery, : 1-10, May 2019
Fartaria MJ, Kober T, Granziera C, Bach Cuadra M. Longitudinal analysis of white matter and cortical lesions in multiple sclerosis - NeuroImage: Clinical, 23: 101938, July 2019
Deprez M, Price A, Christiaens D, Estrin Georgia L, Cordero-Grande L, Hutter J, Daducci A, Tournier JD, Rutherford M, Counsell SJ, Bach Cuadra M, Hajnal JV. Higher order spherical harmonics reconstruction of fetal diffusion MRI with intensity correction - IEEE Transactions on Medical Imaging, : 1-1, September 2019
Dunet V, Fartaria MJ, Deverdun J, Le Bars E, Maury F, Castelnovo G, Kober T, Cuadra MB, Geny C, Marechal B, de Champfleur NM.. Episodic memory decline in Parkinson’ s disease: relation with white matter hyperintense lesions and influence of quantification method. - Brain Imaging and Behavior, 13(3): 810-818, June 2019
Fartaria MJ, Sati P, Todea A, Radue EW, Rahmanzadeh R, OʼBrien K, Reich DS, Bach Cuadra M, Kober T, Granziera C. Automated Detection and Segmentation of Multiple Sclerosis Lesions Using Ultra-High-Field MP2RAGE - Investigative Radiology, 54(6): 356-364, June 2019
Pla PDA, Saxena V, Jaldén J. SpotNet – Learned iterations for cell detection in image-based immunoassays - 16th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, : 1023–1027, Venice, Italian Republic, April 2019
Donati L, Soubies E, Unser M. Inner-Loop-Free ADMM for Cryo-EM - 16th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, : , Venice, Italian Republic, April 2019
Debarre T, Fageot J, Gupta H, Unser M. Solving Continuous-Domain Problems Exactly with Multiresolution B-Splines - 44th IEEE International Conference on Acoustics, Speech, and Signal Processing, : 5122-5126, Brighton, United Kingdom, May 2019
Unser M. A Representer Theorem for Deep Neural Networks - Journal of Machine Learning Research, 20(110): 1−30, January 2019
Soubies E, Unser M. Computational Super-Sectioning for Single-Slice Structured-Illumination Microscopy - IEEE Transactions on Computational Imaging, 5(2): 240 - 250, December 2018
Debarre T, Fageot J, Gupta H, Unser M. B-Spline-Based Exact Discretization of Continuous-Domain Inverse Problems With Generalized TV Regularization - IEEE Transactions on Information Theory, 65(7): 4457 - 4470, July 2019
Soubies E, Soulez F, McCann MT, Pham T, Donati L, Debarre T, Sage D, Unser M. Pocket guide to solve inverse problems with GlobalBioIm - Inverse Problems, 35(10): 1-20, October 2019
Debarre T, Aziznejad S, Unser M. Hybrid-Spline Dictionaries for Continuous-Domain Inverse Problems - IEEE Transactions on Signal Processing, 67(22): 5824-5836, October 2019
McCann MT, Unser M. Biomedical Image Reconstruction: From the Foundations to Deep Neural Networks - Foundations and Trends® in Signal Processing, 13(3): 280-359, December 2019
Zöller D, Sandini C, Karahanoglu FI, Padula MC, Schaer M, Eliez S, Van De Ville D. Large-Scale Brain Network Dynamics Provide a Measure of Psychosis and Anxiety in 22q11.2 Deletion Syndrome - Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 4(10): 881–892, October 2019
Zoller DM, Bolton TAW, Karahanoglu FI, Eliez S, Schaer M, Van De Ville D. Robust Recovery of Temporal Overlap Between Network Activity Using Transient-Informed Spatio-Temporal Regression - IEEE Transactions on Medical Imaging, 38(1): 291-302, January 2019
Sokolov A, Granziera C, Fischi-Gomez E, Preti Maria G, Ryvlin P, Van De Ville D, Friston K. Brain network analyses in clinical neuroscience - Swiss Archives of Neurology, Psychiatry and Psychotherapy, 170: 03074, December 2019
Petrovic M, Bolton TAW, Preti MG, Liégeois R, Van De Ville D. Guided graph spectral embedding: Application to the C. elegans connectome - Network Neuroscience, 3(3): 807-826, July 2019
Quevenco FC, Schreiner SJ, Preti MG, van Bergen JMG, Kirchner T, Wyss M, Steininger SC, Gietl A, Leh SE, Buck A, Pruessmann KP, Hock C, Nitsch RM, Henning A, Van De Ville D, Unschuld PG. GABA and glutamate moderate beta-amyloid related functional connectivity in cognitively unimpaired old-aged adults - NeuroImage: Clinical, 22: 101776, 2019
Nicastro N, Wegrzyk J, Preti MG, Fleury V, Van de Ville D, Garibotto V, Burkhard PR. Classification of degenerative parkinsonism subtypes by support-vector-machine analysis and striatal 123I-FP-CIT indices - Journal of Neurology, 266(7): 1771-1781, July 2019
Atashi F, André-Lévigne D, Colin DJ, Germain S, Pittet-Cuénod B, Modarressi A. Does non-activated platelet-rich plasma (PRP) enhance fat graft outcome? An assessment with 3D CT-scan in mice - Journal of Plastic, Reconstructive & Aesthetic Surgery, 72(4): 669-675, April 2019
Preti MG, Van De Ville D. Decoupling of brain function from structure reveals regional behavioral specialization in humans - Nature Communications, 10(1): 4747, October 2019
Zoetemelk M, Rausch M, Colin DJ, Dormond O, Nowak-Sliwinska P. Short-term 3D culture systems of various complexity for treatment optimization of colorectal carcinoma - Scientific Reports, 9(1): 7103, May 2019
Oldani G, Peloso A, Slits F, Gex Q, Delaune V, Orci LA, van de Looij Y, Colin DJ, Germain S, de Vito C, Rubbia-Brandt L, Lacotte S, Toso C. The impact of short-term machine perfusion on the risk of cancer recurrence after rat liver transplantation with donors after circulatory death - PLOS One, 14(11): , November 2019
Colin DJ, Bejuy O, Germain S, Triponez F, Serre-Beinier V. Implantation and Monitoring by PET/CT of an Orthotopic Model of Human Pleural Mesothelioma in Athymic Mice - Journal of Visualized Experiments, (154): , December 2019
Berchtold L, Friedli I, Crowe L, Martinez C, Moll S, Hadaya K, de Perrot T, Combescure C, Martin PY, Vallée JP, de Seigneux S. Validation of the corticomedullary difference in magnetic resonance imaging-derived apparent diffusion coefficient for kidney fibrosis detection: a cross-sectional study - Nephrology Dialysis Transplantation, 35(6): 937-945, January 2019
Guillemin PC, Gui L, Lorton O, Zilli T, Crowe LA, Desgranges S, Montet X, Terraz S, Miralbell R, Salomir R, Boudabbous S. Mild hyperthermia by MR-guided focused ultrasound in an ex vivo model of osteolytic bone tumour: optimization of the spatio-temporal control of the delivered temperature - Journal of Translational Medicine, 17(1): 350, October 2019
Lorton O, Guillemin PC, Mori N, Crowe LA, Boudabbous S, Terraz S, Becker CD, Cattin P, Salomir R, Gui L. Self-Scanned HIFU Ablation of Moving Tissue Using Real-Time Hybrid US-MR Imaging - IEEE Transactions on Biomedical Engineering, 66(8): 2182-2191, August 2019
Kwong R, Ge Y, Steel K, Bingham S, Abdullah S, Fujikura K, Wang W, Pandya A, Chen YY, Mikolich JR, Boland S, Arai AE, Bandettini WP, Shanbhag SM, Patel AR, Narang A, Farzaneh-Far A, Romer B, Heitner JF, Ho JY, Singh J, Shenoy C, Hughes A, Leung SW, Marji M, Gonzalez JA, Mehta S, Shah DJ, Debs D, Raman SV, Guha A, Ferrari VA, Schulz-Menger J, Hachamovitch R, Stuber M, Simonetti OP. Cardiac Magnetic Resonance Stress Perfusion Imaging for Evaluation of Patients With Chest Pain - Journal of the American College of Cardiology, 74(14): 1741-1755, October 2019
Wilson M, Andronesi O, Barker P, Bartha R, Bizzi A, Bolan PJ, Brindle K, Choi IY, Cudalbu C, Dydak U, Emir U, Gonzalez R, Gruber S, Gruetter R, Gupta RK, Heerschap A, Henning A, Hetherington HP, Huppi P, Hurd R, Kantarci K, Kauppinen R, Klomp D, Kreis R, Kruiskamp MJ, Leach MO, Lin AP, Luijten PR, Marjańska M, Maudsley AA, Meyerhoff DJ, Mountford CE, Mullins PG, Murdoch JB, Nelson SJ, Noeske R, Öz G, Pan JW, Peet AC, Poptani H, Posse S, Ratai E, Salibi N, Scheenen T, Smith I, Soher B, Tkáč I, Vigneron D, Howe F. Methodological consensus on clinical proton MRS of the brain: Review and recommendations - Magnetic Resonance in Medicine, 82: 527-550, August 2019
Dubois J, Lefèvre J, Angleys H, Leroy F, Fischer C, Lebenberg J, Dehaene-Lambertz G, Borradori-Tolsa C, Lazeyras F, Hertz-Pannier L, Mangin JF, Hüppi PS, Germanaud D. The dynamics of cortical folding waves and prematurity-related deviations revealed by spatial and spectral analysis of gyrification - NeuroImage, 185: 934-946, January 2019
Lordier L, Loukas S, Grouiller F, Vollenweider A, Vasung L, Meskaldij D, Lejeune F, Pittet M, Borradori-Tolsa C, Lazeyras F, Grandjean D, Van De Ville D, Hüppi P. Music processing in preterm and full-term newborns: A psychophysiological interaction (PPI) approach in neonatal fMRI - NeuroImage, 185: 857-864, January 2019
Gui L, Loukas S, Lazeyras F, Hüppi P, Meskaldji D, Borradori Tolsa C. Longitudinal study of neonatal brain tissue volumes in preterm infants and their ability to predict neurodevelopmental outcome - NeuroImage, 185: 728-741, January 2019
Klauser A, Courvoisier S, Kasten J, Kocher M, Guerquin-Kern M, Van De Ville D, Lazeyras F. Fast high-resolution brain metabolite mapping on a clinical 3T MRI by accelerated 1 H-FID-MRSI and low-rank constrained reconstruction - Magnetic Resonance in Medicine, 81: 2841-2857, May 2019
Ptak R, Lazeyras F. Functional connectivity and the failure to retrieve meaning from shape in visual object agnosia - Brain and Cognition, 131: 94-101, April 2019
Moeckli B, Sun P, Lazeyras F, Morel P, Moll S, Pascual M, Bühler L. Evaluation of donor kidneys prior to transplantation: an update of current and emerging methods - Transplant International, 32: 459-469, May 2019
Lordier L, Meskaldji D, Grouiller F, Pittet M, Vollenweider A, Vasung L, Borradori-Tolsa C, Lazeyras F, Grandjean D, Van De Ville D, Hüppi P. Music in premature infants enhances high-level cognitive brain networks - Proceedings of the National Academy of Sciences, 116: 12103-12108, June 2019
Boto J, Askin N, Regnaud A, Kober T, Gkinis G, Lazeyras F, Lövblad K, Vargas M. Cerebral Gray and White Matter Involvement in Anorexia Nervosa Evaluated by T1, T2, and T2* Mapping - Journal of Neuroimaging, 29: 598-604, September 2019
Longchamp A, Meier R, Colucci N, Balaphas A, Orci L, Nastasi A, Longchamp G, Moll S, Klauser A, Pascual M, Lazeyras F, Corpataux J, Bühler L. Impact of an intra-abdominal cooling device during open kidney transplantation in pigs - Swiss Medical Weekly, 149: w20143, December 2019
Crottaz-Herbette S, Tissieres I, Fornari E, Rapin P, Clarke S. Remodelling the attentional system after left hemispheric stroke: Effect of leftward prismatic adaptation - Cortex, 115: 43-55, June 2019
Yerly J, Becce F, van Heeswijk R, Verdun F, Gubian D, Meuli R, Stuber M. In vitro optimization and comparison of CT angiography versus radial cardiovascular magnetic resonance for the quantification of cross-sectional areas and coronary endothelial function - Journal of Cardiovascular Magnetic Resonance, 21: 11, February 2019
Delacoste J, Feliciano H, Yerly J, Dunet V, Beigelman-Aubry C, Ginami G, van Heeswijk R, Piccini D, Stuber M, Sauty A. A black-blood ultra-short echo time (UTE) sequence for 3D isotropic resolution imaging of the lungs - Magnetic Resonance in Medicine, 81: 3808-3818, June 2019
Albrecht M, Varga-Szemes A, Schoepf U, Nance J, De Cecco C, De Santis D, Tesche C, Eid M, Penmetsa M, Lesslie V, Piccini D, Goeller M, Wichmann J, Vogl T, Chowdhury S, Nutting A, Hlavacek A. Diagnostic Accuracy of Noncontrast Self-navigated Free-breathing MR Angiography versus CT Angiography: A Prospective Study in Pediatric Patients with Suspected Anomalous Coronary Arteries - Academic Radiology, 10: 1309-1317, October 2019
Delacoste J, Dunet V, Dournes G, Lovis A, Rohner C, Elandoy C, Simons J, Long O, Piccini D, Stuber M, Prior J, Nicod L, Beigelman-Aubry C. MR Volumetry of Lung Nodules: A Pilot Study - Frontiers in Medicine, 6: 18, February 2019
Bastiaansen JA, van Heeswijk R, Stuber M, Piccini D. Noncontrast free-breathing respiratory self-navigated coronary artery cardiovascular magnetic resonance angiography at 3 T using lipid insensitive binomial off-resonant excitation (LIBRE) - Journal of Cardiovascular Magnetic Resonance, 21: 38, July 2019
Di Sopra L, Piccini D, Coppo S, Stuber M, Yerly J. An automated approach to fully self-gated free-running cardiac and respiratory motion-resolved 5D whole-heart MRI - Magnetic Resonance in Medicine, 82: 2118-2132, December 2019
Bastiaansen JA, Piccini D, Di Sopra L, Roy C, Heerfordt J, Edelman R, Koktzoglou I, Yerly J, Stuber M. Natively fat-suppressed 5D whole-heart MRI with a radial free-running fast-interrupted steady-state (FISS) sequence at 1.5T and 3T - Magnetic Resonance in Medicine, 83: 45-55, January 2020
van Heeswijk R, Bastiaansen J, Iglesias J, Degrauwe S, Rotman S, Barras J, Regamey J, Lauriers N, Tozzi P, Yerly J, Ginami G, Stuber M, Hullin R. Quantification of myocardial interstitial fibrosis and extracellular volume for the detection of cardiac allograft vasculopathy - The International Journal of Cardiovascular Imaging, 36: 533-542, March 2020
Heerfordt J, Stuber M, Maillot A, Bianchi V, Piccini D. A quantitative comparison between a navigated Cartesian and a self-navigated radial protocol from clinical studies for free-breathing 3D whole-heart bSSFP coronary MRA - Magnetic Resonance in Medicine, 84: 157-169, 2020
Darçot E, Colotti R, Pellegrin M, Wilson A, Siegert S, Bouzourene K, Yerly J, Mazzolai L, Stuber M, van Heeswijk R. Towards Quantification of Inflammation in Atherosclerotic Plaque in the Clinic – Characterization and Optimization of Fluorine-19 MRI in Mice at 3 T - Scientific Reports, 9(1): 17488, November 2019
Rubega M, Carboni M, Seeber M, Pascucci D, Tourbier S, Toscano G, Van Mierlo P, Hagmann P, Plomp G, Vulliemoz S, Michel C. Estimating EEG Source Dipole Orientation Based on Singular-value Decomposition for Connectivity Analysis - Brain Topography, 32(4): 704-719, July 2019
Perizzolo V, Berchio C, Moser D, Gomez C, Vital M, Arnautovic E, Torrisi R, Serpa S, Michel C, Schechter D. EEG recording during an emotional face-matching task in children of mothers with interpersonal violence-related posttraumatic stress disorder - Psychiatry Research: Neuroimaging, 283: 34-44, January 2019
Seeber M, Cantonas L, Hoevels M, Sesia T, Visser-Vandewalle V, Michel C. Subcortical electrophysiological activity is detectable with high-density EEG source imaging - Nature Communications, 10(1): 753, February 2019