Publications
Pizzolato M, Yu T, Canales-Rodrı́guez EJ, Thiran JP. Robust T2 relaxometry with hamiltonian MCMC for myelin water fraction estimation - 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), : , Venice, Italy, April 2019
Pizzolato M, Deriche R, Canales-Rodríguez EJ, Thiran JP. Spatially varying Monte Carlo sure for the regularization of biomedical emages - 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), : , Venice, Italy, April 2019
Ocampo-Pineda M, Schiavi S, Frigo M, Barakovic M, Girard G, Descoteaux M, Thiran JP, Daducci A. Reducing false-positive connections using hierarchical microstructure-informed tractography - International Society for Magnetic Resonance in Medicine (ISMRM) 27th Annual Meeting & Exhibition, : , Montréal, Canada, May 2019
Barakovic M, Leuze C, Crow A, Tian Q, Daducci A, Thiran JP, Deisseroth K, McNab J. Comparing fiber orientation estimates from CLARITY and Diffusion MRI in macaque visual cortex - International Society for Magnetic Resonance in Medicine (ISMRM) 27th Annual Meeting & Exhibition, : , Montréal, Canada, May 2019
Albrici T, Fasounaki M, Bagher Salimi S, Vray G, Bozorgtabar B, Ekenel HK, Thiran JP. G2-VER: Geometry Guided Model Ensemble for Video-based Facial Expression Recognition - 2019 14th IEEE International Conference on Automatic Face & Gesture Recognition (FG 2019), : , Lille, France, May 2019
Nicholson AA, Harricharan S, Densmore M, Neufeld RWJ, Ros T, McKinnon MC, Frewen PA, Théberge J, Jetly R, Pedlar D, Lanius RA. Classifying heterogeneous presentations of PTSD via the default mode, central executive, and salience networks with machine learning - NeuroImage: Clinical, 27: 102262, April 2020
Yu T, Pizzolato M, Girard G, Rafael-Patino J, Canales-Rodríguez EJ, Thiran JP. Robust Biophysical Parameter Estimation with a Neural Network Enhanced Hamiltonian Markov Chain Monte Carlo Sampler - International Conference on Information Processing in Medical Imaging (IPMI), : 818-829, Hong Kong, June 2019
Rafael-Patino J, Barakovic M, Girard G, Daducci A, Thiran JP. Learning Global Brain Microstructure Maps Using Trainable Sparse Encoders - 2019 IEEE International Conference on Image Processing (ICIP), : , Taipei, Taiwan, September 2019
Besson A, Perdios D, Wiaux Y, Thiran JP. Joint Sparsity with Partially Known Support and Application to Ultrasound Imaging - IEEE Signal Processing Letters, 26(1): 84 - 88, November 2018
Canales-Rodríguez EJ, Haitz Legarreta J, Pizzolato M, Rensonnet G, Girard G, Patino J, Barakovic M, Romascano D, Alemán-Gómez Y, Radua J, Pomarol-Clotet E, Salvador R, Thiran JP, Daducci A. Sparse wars: A survey and comparative study of spherical deconvolution algorithms for diffusion MRI - NeuroImage, 184: 140-160, January 2019
Rensonnet G, Scherrer B, Girard G, Jankovski A, Warfield SK, Macq B, Thiran JP, Taquet M. Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations - NeuroImage, 184: 964-980, January 2019
Schilling KG, Nath V, Hansen C, Parvathaneni P, Blaber J, Gao Y, Neher P, Aydogan DB, Shi Y, Ocampo-Pineda M, Schiavi S, Daducci A, Girard G, Barakovic M, Patino JR, Romascano D, Rensonnet G, Pizzolato M, Bates A, Fischi E, Thiran JP, Canales-Rodríguez E, Huang C, Zhu H, Zhong L, Cabeen R, Toga AW, Rheault F, Theaud G, Houde JC, Sidhu J, Chamberland M, Westin CF, Dyrby TB, Verma R, Rathi Y, Irfanoglu MO, Thomas C, Pierpaoli C, Descoteaux M, Anderson AW, Landman BA. Limits to anatomical accuracy of diffusion tractography using modern approaches - NeuroImage, 185: 1-11, January 2019
Innocenti GM, Dyrby TB, Girard G, St-Onge E, Thiran JP, Daducci A, Descoteaux M. Topological principles and developmental algorithms might refine diffusion tractography - Brain Structure and Function, 224(1): 1-8, January 2019
Besson A, Roquette L, Perdios D, Simeoni M, Arditi M, Hurley P, Wiaux Y, Thiran JP. A Physical Model of Non-stationary Blur in Ultrasound Imaging - IEEE Transactions on Computational Imaging, 5(3): 381 - 394, September 2019
Bozorgtabar B, Rad MS, Ekenel HK, Thiran JP. Learn to synthesize and synthesize to learn - Computer Vision and Image Understanding, 185: 1-11, May 2019
Tuleasca C, Bolton T, Régis J, Najdenovska E, Witjas T, Girard N, Thiran JP, Levivier M, Van De Ville D. Thalamotomy for tremor normalizes aberrant pre-therapeutic visual cortex functional connectivity - Brain, 142(11): e57, November 2019
Hilbert T, Schulz J, Marques JP, Thiran JP, Krueger G, Norris DG, Kober T. Fast model‐based T2 mapping using SAR‐reduced simultaneous multislice excitation - Magnetic Resonance in Medicine, 82(6): 2090-2103, December 2019
Girault FM, Sonnay S, Gruetter R, Duarte JMN. Alterations of Brain Energy Metabolism in Type 2 Diabetic Goto-Kakizaki Rats Measured In Vivo by 13C Magnetic Resonance Spectroscopy - Neurotoxicity Research, 36(2): 268-278, August 2019
Matusz PJ, Dikker S, Huth A, Perrodin C. Are We Ready for Real-world Neuroscience? - Journal of Cognitive Neuroscience, 31(3): 327-338, March 2019
Murray MM, Antonakis J. An introductory guide to organizational neuroscience - Organizational Research Methods, 22: 6-16, September 2018
Tivadar RI, Murray MM. A primer on electroencephalography and event-related potentials for organizational neuroscience - Organizational Research Methods, 22: 69-94, October 2018
Biasiucci A, Franceschiello B, Murray MM. Electroencephalography - Current Biology, 29(3): 80-85, February 2019
Notter MP, Hanke M, Murray MM, Geiser E. Encoding of auditory temporal Gestalt in the human brain - Cerebral Cortex, 29(2): 475-484, February 2019
Murray MM, Thelen A, Ionta S, Wallace MT. Contributions of Intraindividual and Interindividual Differences to Multisensory Processes - Journal of Cognitive Neuroscience, 31(3): 360-376, March 2019
Matusz PJ, Merkley R, Faure M, Scerif G. Expert attention: Attentional allocation depends on the differential development of multisensory number representations - Cognition, 186: 171-177, May 2019
Matusz PJ, Turoman N, Tivadar RI, Retsa C, Murray MM. Brain and cognitive mechanisms of top-down attentional control in a multisensory world: Benefits of electrical neuroimaging - Journal of Cognitive Neuroscience, 31(3): 412-430, May 2019
Vietti Violi N, Hilbert T, Bastiaansen JAM, Knebel JF, Ledoux JB, Stemmer A, Meuli R, Kober T, Schmidt S. Patient respiratory-triggered quantitative T2 mapping in the pancreas - Journal of Magnetic Resonance Imaging, 50(2): 410-416, August 2019
Turpin H, Urben S, Ansermet F, Borghini A, Murray MM, Muller-Nix C. The interplay between prematurity, maternal stress and children’s intelligence quotient at age 11: A longitudinal study - Scientific Reports, 9(1): 450, January 2019
Notter MP, Gale D, Herholz P, Markello R, Notter-Bielser ML, Whitaker K. A Python package to generate coordinate tables, region labels, and informative figures from statistical MRI images - Journal of Open Source Software, 4(34): 1257, February 2019
Tivadar RI, Rouillard T, Chappaz C, Knebel JF, Turoman N, Anaflous F, Roche J, Matusz PJ, Murray MM. Mental Rotation of Digitally-Rendered Haptic Objects - Frontiers in Integrative Neuroscience, 13(7): , March 2019
Neel ML, Yoder P, Matusz PJ, Murray MM, Miller A, Burkhardt S, Emery L, Hague K, Pennington C, Purnell J, Levengood M, Maitre NL. Randomized controlled trial protocol to improve multisensory neural processing, language and motor outcomes in preterm infants - BMC Pediatrics, 19(1): 81, March 2019
Protopapa F, Hayashi MJ, Kulashekhar S, der Zwaag W, Battistella G, Murray MM, Kanai R, Bueti D. Chronotopic maps in the human medial premotor cortex - PLOS Biology, 17(3): , 2019
Rotzinger DC, Breault S, Knebel JF, Beigelman-Aubry C, Jouannic AM and Qanadli SD. Can a Trained Radiology Technician Do Arterial Obstruction Quantification in Patients With Acute Pulmonary Embolism? - Frontiers in Cardiovascular Medicine, 6: 38, April 2019
Franceschiello B, Mashtakov A, Citti G, Sarti A. Geometrical Optical Illusion via Sub-Riemannian Geodesics in the Roto-Translation Group. Differential Geometry and Its Applications - Differential Geometry and Its Applications, 65: 55-77, April 2019
Attwell C, Jöhr J, Pincherle A, Pignat JM, Kaufmann N, Knebel JF, Berney L. Ryvlin P, Diserens K. Neurosensory stimulation outdoors enhances cognition recovery in cognitive motor dissociation: A prospective crossover study - Neurorehabilitation, 44(4): 545–554, July 2019
Taffin H, Maurey H, Ozanne A, Durand P, Husson B, Knebel JF, Adamsbaum C, Deiva K, Saliou G. Long‐term outcome of vein of Galen malformation - Developmental Medicine and Child Neurology, : , November 2019
Coricelli C, Toepel U, Notter ML, Murray MM, Rumiati RI. Distinct brain representations of processed and unprocessed foods - European Journal of Neuroscience, 50(8): 3389-3401, October 2019
Kapitanova M, Knebel JF, El Ezzi O, Artaz M, de Buys Roessingh A, Richard C. Influence of infancy care strategy on hearing in children and adolescents: A longitudinal study of children with unilateral lop and/or cleft palate - International Journal of Pediatric Otorhinolaryngology, 114: 80-86, 2019
Denervaud S, Knebel JF, Hagmann P, Gentaz E. Beyond executive functions, creativity skills benefit academic outcomes: Insights from Montessori education - PLOS One, 14(11): , November 2019
Horta GA, Horta RC, Steinfeld K, Koch CR, Mello GR, Kara-Junior N. Ultrasound power and irrigation volume in different lens opacity grades: comparison of femtosecond laser-assisted cataract surgery and conventional phacoemulsification - Clinics (Sao Paulo), 74(1294): , October 2019
Debbane M, Lazouret M, Lagioia A, Schneider M, Van De Ville D, Eliez S. Resting-state networks in adolescents with 22q11.2 deletion syndrome: Associations with prodromal symptoms and executive functions - Schizophrenia Research, 139(1-3): 33-9, August 2012
Tourbier S, Aleman-Gomez Y, Griffa A, Bach Cuadra M, Hagmann P. Multi-Scale Brain Parcellator: a BIDS App for the Lausanne Connectome Parcellation - 25th Annual Meeting of the Organization for Human Brain Mapping (OHBM), : , Rome, Italy, June 2019
Alemán-Gómez Y, Fernández-Pena A, Mullier E, Tourbier S, Griffa A, Baumann PS, Bach Cuadra M, Hagmann P. A unified multi-scale probabilistic atlas of the human gray matter - 25th Annual Meeting of the Organization for Human Brain Mapping (OHBM), : , Rome, Italy, June 2019
Alemán-Gómez Y, Baumgartner T, Roine T, Najdenovska E, Rovo Z, Conus P, Do K, Steullet P, Bach Cuadra M, Baumann PS. Microstructure of the thalamus in early psychosis and chronic patients based on diffusion weighted magnetic resonance imaging - National Centers of Competence in Research Meeting 2019, 33(5): 440–448, March 2019
Steullet P, Cabungcal JH, Aleman Y, Baumgartner T, Rovò Z, Baumann P, Bach Cuadra M, Conus P, Do KQ. Reticular, mediodorsal and pulvinar thalamic nuclei in schizophrenia: potential role of redox dysregulation - Society of Biological Psychiatry Annual Meeting, : , Chicago, USA, May 2019
Rahmanzadeh R, Lu PJ, Weigel M, Galbusera R, La Rosa F, Bach Cuadra M, Schiavi S, Radue EW, Kuhle J, Kappos L, Granziera C. Axonal damage explains part of and extends beyond the diffuse pathology evidenced by T1 mapping in normal-appearing white matter of multiple sclerosis patients - Multiple Sclerosis Journal, 25(7): 683-684, June 2019
Rahmanzadeh R, Lu PJ, Weigel M, Galbusera R, Nguyen TD, Schiavi S, Wang Y, La Rosa F, Bach Cuadra M, Radue EW, Kuhle J, Kappos L, Granziera C. Axonal and myelin injury in white matter and cortex of relapsing-remitting and progressive multiple sclerosis patients: a combined myelin water and multi-shell diffusion MRI study - Multiple Sclerosis Journal, 25(7): 682-683, June 2019
Lu PJ, Rahmanzadeh R, Galbusera R, Odry B, Weigel M, La Rosa F, Bach Cuadra M, Nguyen T, Wang Y, Daducci A, Kuhle J, Cattin P, Kappos L, Granziera C. Deep learning analysis applied to multi-parametric advanced MRI shows higher myelin content and neurite density in juxtacortical lesions compared to periventricular lesions - Multiple Sclerosis Journal, 25(7): 241- 242, June 2019
La Rosa F, Joao Fartaria M, Abdulkadir A, Rahmanzadeh R, Lu PJ, Galbusera R, Granziera C, Thiran JP, Bach Cuadra M. Deep learning-based detection of cortical lesions in multiple sclerosis patients with FLAIR, DIR, and MP2RAGE MRI sequences - Multiple Sclerosis Journal, 25(7): 131-356, June 2019
Fartaria MJ, Richiardi J, Maggi P , Sati P, Reich DS, Granziera C, Bach Cuadra M, Kober T. Differential diagnosis of multiple sclerosis based on the central vein sign assessment using deep learning: a multicentre study - International Society for Magnetic Resonance in Medicine (ISMRM) 27th Annual Meeting & Exhibition, : , Montreal, Canada, May 2019
Deman P, Tourbier S, Khawam M, de Dumast P, Kebiri H, Lajous H, Maeder P, Hagmann P, Meuli R, Dunet V, Koob M, Bach Cuadra M. Super-Resolution Foetal Magnetic Resonance Imaging for computer assisted diagnosis and quantitative analysis - Swiss Perinatal Research, : , Lausanne, Switzerland, May 2019
Najdenovska E, Masci PG, Giulia Pavon A, Bach Cuadra M, Schwitter J. A novel clustering approach applied to T1 mapping time series to identify microvascular obstruction in patients with sub-acute ST-elevation myocardial infarction - Society for Cardiovascular Magnetic Resonance (SCMR) Annual Scientific Sessions, : , Seattle, USA, February 2019
de Graaf P, Nguyen HG, de Bloeme C, Meije Wink A, Steenwijk MD, Pica A, Sznitman R, Bach Cuadra M. Automated segmentation of eye structures and retinoblastoma on MRI using Unet with statistical shape priors - European Congress of Radiology, : , Vienne, Autriche, February 2019
Nguyen HG, Hrbacek J, Weber DC, Sznitman R, Bach Cuadra M, Pica A. A novel deep-learning framework applies to analysis the image characteristics of uveal melanoma tissue in MRI - 58th Annual Conference of the Particle Therapy Co-operative Group, : , Manchester, England, June 2019
Nguyen HG, Pica A, Hrbacek J, Weber DC, La Rosa F, Schalenbourg A, Sznitman R, Bach Cuadra M. A novel segmentation framework for uveal melanoma in magnetic resonance imaging based on class activation maps - 2nd International Conference on Medical Imaging with Deep Learning, 102: 370-379, 2019